Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01248 ATGAAGACCCATTCCCATTTCAACATTCATCTTTTCTTCCAAATTTTCCTCTTCTTCGGCACTCTTTTCTGCCTCTCCTCTGCTGTTTCTGACGAGCTTCTTCAACTTTCCGGCCATGGCGGCCGAGGCCGCGGCCTCACCGACGCCGAAGCTCACTACATCCGTCAGCGCCAACTTCTTTCCGTTAGAGACGAATTTGGCGACCGTGGTGAAGAAGTCACCGTCGATCCCAAGCTTGTTTTTGAAAACGACAGACTCAGGAATGCTTACATAGCGTTACAAGCTTGGAAGCAAGCGATTCTCTCTGATCCTTTCAATCTCACTCAGAATTGGGTTGGATCTGATGTTTGTAGCTACAATGGGGTTTTCTGTGCTCCGGCGCCGGATAATTCCTCGATCCGTACGGTCGCCGGTATCGACCTCAACCATGGCGACATTGCCGGTTACTTACCGGAGGAGCTTGGTCTTCTTGTGGATCTTGCATTGTTCCATGTAAACTCGAATCGCTTCTGTGGGACTGTTCCTCACAAGTTCAAGAACTTGAAGCGGTTGTTTGAGTTGGATCTGAGCAACAATCGCTTCGCCGGAAAGTTCCCTCGGGTGGTTCTTGAGCTGCCGGAGCTGAAGTTTTTGGATCTGAGATTTAATGAGTTTGAAGGAACTGTCCCCAAGGAGCTTTTCGACAAGGATTTGGACGCCATTTTCATCAACCATAACAGATTCCGGTTTGACTTGCCGGAAAATTTCGGGAACTCGCCGGTTTCGGTTATTGTTCTTGCGAATAACAAATTTCATGGGTGTGTTCCGGGGAGCATTGGGAATATGACAAGATTGAATGAGATTATTCTGATGAATAATGGGTTTCGATCGTGTTTGCCGTCGGAGATTGGGTTTCTGAAGAATCTGACGGTGTTTGATGTGAGTTTTAATGAGTTTTTTGGGAGTTTGCCGGAGACGATCGGCGGAATGGTGAGTTTAGAGCAGCTGAATGTGGCGCATAATTTCTTGTCTGGGAAGATTCCGGAGAGTATCTGTAAATTGCCGAATCTGCAGAACTTTACTTACTCTTACAATTTCTTTACGGGAGAGGCGCCGTCGTGCTTGGCTTTGCCGGATTTTGATGACCGGAGGAACTGTCTACCTGACCGGCCGGTACAGCGGTCTGAGAGGCAATGTAAGTCGTTCTTGTCTAAGCCTGTGGATTGCAGTTCTTTTGGATGTCCTTCTTATGTTGCTCCCTCGCCACCGGTAACGGTGCCTTCTCCGCCACCTGTTGTTGTTCCGTCGCCGCCGCCACCTGTTCCCACTCCTTCGCCACCTACTTCCGAATCACATCCCATTTACCGACCACGCCCTCCGCCACCTCCATCCCCCTCTCCCCCTCCGCCGCCTGTTTACTCTCCCCCGCCGCCTCCACCATCCCCACCACCGCCCTCACCACCGCCCCACCACCGCCAGTTTATTCTCCACCACCCACCTCCCACCTCCACCTCCCCCGTCTCCCCCTCCGCCTTCACCACCACCGCCGCCCCACCGGTTTACTCTCCACCCCGCCTCCACCATCACCACACCACCGCCCCCACCGTGTATTGTGTACGTCCATCACCCCCACCGCCACCACCAAACTCTCCCCCACCTCCTCCTCCCTTGTTCTCACCACCCCCACCTGTTTACTACTACAATTCACCACCACCACCCAACTCTCCACCTCCGCCGCCATTGTACTCTCCTCCACCTCCCAACTCGCCGCCTCCTCCACCACACTCACCTCCACCGCCAATCTATCCTTACTTATCTCCCCCACCTCCTCCACCTGTCTACTCTCCCCCTCCACCAGTCTATTCGCCGCCCCCACCACCGCCGTGTATAGAGCCTCCTCCACCTCCACCGCCGCCATGTATTGAGTATCATGAACCCCCACCCCCACCATCACCCTCACCACCTCCGCCAATCCAATACCTTCCTCCGCCATCTCCTTCACCCCCCCCCCCACCGCCTCCCACCCCCGTTTACCAATCACCTCCACCGCCAGTCTATTACTCTCCCCCACCACCACCATCACCATCTCCACCTCCACCACCTGCATCACCACCACCATCACCTGTATACGAAGGCCCACTACCACCAATCTATGGAGTTTCGTACGCCTCACCCCCACCTCCACCCTACTATTGA 2175 54.16 MKTHSHFNIHLFFQIFLFFGTLFCLSSAVSDELLQLSGHGGRGRGLTDAEAHYIRQRQLLSVRDEFGDRGEEVTVDPKLVFENDRLRNAYIALQAWKQAILSDPFNLTQNWVGSDVCSYNGVFCAPAPDNSSIRTVAGIDLNHGDIAGYLPEELGLLVDLALFHVNSNRFCGTVPHKFKNLKRLFELDLSNNRFAGKFPRVVLELPELKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFRFDLPENFGNSPVSVIVLANNKFHGCVPGSIGNMTRLNEIILMNNGFRSCLPSEIGFLKNLTVFDVSFNEFFGSLPETIGGMVSLEQLNVAHNFLSGKIPESICKLPNLQNFTYSYNFFTGEAPSCLALPDFDDRRNCLPDRPVQRSERQCKSFLSKPVDCSSFGCPSYVAPSPPVTVPSPPPVVVPSPPPPVPTPSPPTSESHPIYRPRPPPPPSPSPPPPPVYSPPPPPPSPPPPSPPPHHRQFILHHPPPTSTSPVSPSAFTTTAAPPVYSPPRLHHHHTTAPTVYCVRPSPPPPPPNSPPPPPPLFSPPPPVYYYNSPPPPNSPPPPPLYSPPPPNSPPPPPHSPPPPIYPYLSPPPPPPVYSPPPPVYSPPPPPPCIEPPPPPPPPCIEYHEPPPPPSPSPPPPIQYLPPPSPSPPPPPPPTPVYQSPPPPVYYSPPPPPSPSPPPPPASPPPSPVYEGPLPPIYGVSYASPPPPPYY 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11663486 11665775 - Carg10869-RA Car05g01248 149634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01248 724 Pfam Leucine Rich Repeat 325 347 IPR001611 GO:0005515
Car05g01248 724 Pfam Leucine rich repeat 163 217 IPR001611 GO:0005515
Car05g01248 724 MobiDBLite consensus disorder prediction 562 592 - -
Car05g01248 724 MobiDBLite consensus disorder prediction 531 548 - -
Car05g01248 724 MobiDBLite consensus disorder prediction 425 488 - -
Car05g01248 724 MobiDBLite consensus disorder prediction 633 706 - -
Car05g01248 724 MobiDBLite consensus disorder prediction 425 548 - -
Car05g01248 724 Pfam Leucine rich repeat N-terminal domain 92 124 IPR013210 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g01248 Car10g00558 CCT
Car05g01248 Car12g01214 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01423 Car-Chr1:12285343 Car05g01248 Car-Chr5:11663486 1.87E-08 dispersed
Car05g01248 Car-Chr5:11663486 Car11g00470 Car-Chr11:2579101 0 dispersed
Car09g00427 Car-Chr9:2382020 Car05g01248 Car-Chr5:11663486 3.01E-15 dispersed
Car16g00313 Car-Chr16:1916427 Car05g01248 Car-Chr5:11663486 2.13E-51 dispersed
Car17g00412 Car-Chr17:2744096 Car05g01248 Car-Chr5:11663486 9.66E-122 dispersed
Car11g01605 Car-Chr11:12768502 Car05g01248 Car-Chr5:11663486 7.08E-115 transposed
Car10g00558 Car-Chr10:2821826 Car05g01248 Car-Chr5:11663486 0 wgd
Car12g01214 Car-Chr12:11564190 Car05g01248 Car-Chr5:11663486 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01248 - - cmax:111493802 823.542