Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01259 ATGGGGGAAGAAGATTCCGTAGGTGCACCTCAGAAGAAGGCTCAATCGGAGGGTGCTGCGTTGAGTAATTCTTCGTCATCGGATATTCCATCTAAGAAGCTCGCTAGGCAGCTCGATTTCACCGGCTATGGAGGCGCCTCGCATCCTCAATCTCACTCAGACCCGCATTCACAGCCACAGGCTCCATTAGTAGCTCAAAATCTTCCGCAAGCTCCGCCAAAGCCACCGCCGCAGATGGTGGCGGCGTCGATCGCATCTTTGGCGCCTCATTCGTCAGTAAGAGCTGTGAAACCAGAATCACCCATGTCAAGAGCAAGACCTGCCATTGAAGCTAAAGACAGTACTCCTAAGAAGCAAAAACAGTGCAACTGTAAACATTCGCGGTGTCTAAAATTGTACTGTGAATGCTTTGCTTCTGGAATATACTGTGATGGTTGCAACTGCATAAATTGTTATAACAATGTTGAAAATGATACTGCTAGAAGAGAAGCAGTTGAAGCTACATTAGAGCGTAACCCAAATGCGTTTCGACCAAAAATTGCAAGCAGCCCTCATGGGATGCGGGACAACAGGGAGGAGGCGGGGGAGTTGATGATGTTGGGTAAGCACAATAAGGGATGCCACTGCAAGAAGTCGGGTTGTCTAAAGAAATATTGCGAGTGTTTCCAGGCGAACATTCTCTGCTCCGAAAATTGTAAATGTATGGACTGCAAGAATTTTGAGGGAAGTGAAGAGAGACAAGCTCTTTTCCATGGAGATCATGGTAACAACATAGCATTCATTCAACAAGCAGCCAATGCTGCCATAACTGGAGCTATTGGCTCCTCTGGCTATGCTTCACCTCCTGTATCCAAGAAAAGAAAAGGCCAAGAACTCTACTTTGGACTGACAGCCAAGGAACTACCCGCTCATAGGCCAGTGCCATTTCAACAGGCAAATCATATCAGAGTCGCTGCTCCTCCGCTACCGTCCTTCCCCATTGCTGGCGTTGGAACCCCATCATTGTTGGGTCCTTCAAAGTTTACATATAGGTCTTTAATGGCAGACATCATTCAATCACAAGATTTGAAGGATCTTTGCTCGGTTTTGGTTGTGCTGTCGAGTGAAGCTGGCAAGACATTTCAAGACCAAACAAATGCCACAGAAAAGCAATCTGATGCCCAGACAGAAACTTCTGCTGCATCATCCACTCAAGATAGGTTGCAGAAAAAAGATGCATCTGATGAGAAAGCTGCAGCCGATGATCGTTCAAGTGCGAACCAGGCTGATAAAACAACCCCCGACGATTCCAATTCAGATGGTGGAGATGTGCCAAAGGGCGCGCCCATGTCTCCCGGAACGTTAGCTTTGATGTGCGATGAGCAAGATACAATGCTAATGGCTACTGCTTCCCCCAATAGATTAATGGGTCCTGGCTGCAGCACGTCTTCACAGCTGCCTCACGGACGAGACATGTCAGAGGTCTATGCGGAGCAGGAGAGGATCGTCCTTACAAAGCTTAGGGATTGTCTTAATAGACTCATCACTTTGGGAGAAATAAAAGAGACACAATGTTCATCTTTAGCCAGAAGTGAAGTAGGTAATCAAGAACAACAATTTAACAATGGCGCCACAAATTCTAGAACTGAAACTCAGAGTAATATTGGCCAACTCAACAATAAAGTTACAAAATCTTCGATTTCGATTCCACCGTCGGTGAAGACGTCGCAGACGGTAACTACAGCAGTCATGACCCTTAGTAACGACCAGCGACAGAAAGTTTTGCCTCTGTCTTGA 1776 46.62 MGEEDSVGAPQKKAQSEGAALSNSSSSDIPSKKLARQLDFTGYGGASHPQSHSDPHSQPQAPLVAQNLPQAPPKPPPQMVAASIASLAPHSSVRAVKPESPMSRARPAIEAKDSTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENDTARREAVEATLERNPNAFRPKIASSPHGMRDNREEAGELMMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHGNNIAFIQQAANAAITGAIGSSGYASPPVSKKRKGQELYFGLTAKELPAHRPVPFQQANHIRVAAPPLPSFPIAGVGTPSLLGPSKFTYRSLMADIIQSQDLKDLCSVLVVLSSEAGKTFQDQTNATEKQSDAQTETSAASSTQDRLQKKDASDEKAAADDRSSANQADKTTPDDSNSDGGDVPKGAPMSPGTLALMCDEQDTMLMATASPNRLMGPGCSTSSQLPHGRDMSEVYAEQERIVLTKLRDCLNRLITLGEIKETQCSSLARSEVGNQEQQFNNGATNSRTETQSNIGQLNNKVTKSSISIPPSVKTSQTVTTAVMTLSNDQRQKVLPLS 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11732054 11735992 - Carg10858-RA Car05g01259 149645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01259 591 MobiDBLite consensus disorder prediction 44 65 - -
Car05g01259 591 MobiDBLite consensus disorder prediction 16 32 - -
Car05g01259 591 MobiDBLite consensus disorder prediction 375 448 - -
Car05g01259 591 MobiDBLite consensus disorder prediction 375 400 - -
Car05g01259 591 ProSiteProfiles CRC domain profile. 118 242 IPR005172 -
Car05g01259 591 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 205 239 IPR005172 -
Car05g01259 591 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 119 154 IPR005172 -
Car05g01259 591 MobiDBLite consensus disorder prediction 401 417 - -
Car05g01259 591 MobiDBLite consensus disorder prediction 1 119 - -
Car05g01259 591 MobiDBLite consensus disorder prediction 533 564 - -
Car05g01259 591 MobiDBLite consensus disorder prediction 418 432 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g01259 Car11g00499 CCT
Car05g01259 Car10g00582 CCT
Car05g01259 Car11g00499 ECH
Car05g01259 Car10g00582 ECH
Car05g01259 Car12g01226 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g01259 Car-Chr5:11732054 Car17g00197 Car-Chr17:1181670 1.21E-33 dispersed
Car10g00582 Car-Chr10:2937435 Car05g01259 Car-Chr5:11732054 1.81E-180 wgd
Car11g00499 Car-Chr11:2700853 Car05g01259 Car-Chr5:11732054 0 wgd
Car12g01226 Car-Chr12:11661240 Car05g01259 Car-Chr5:11732054 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3611 PF03638 TCR 3.10E-12 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01259 - - csv:101211978 1037.33