Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01260 ATGGAATCTCCACCGGCCAAGAGCTGGAGCATCCACACTCGGCCGGATATCATCCAGAAGTACCAGATCCTCGAGCGAGTCGGATCCGGTGCCTATTCCGATGTTCACCGTGCGCGACGGCTCTCCGACGGCGTCATCGTCGCTTTGAAGGAGATCCACGATTATCAATCGGCGTTCCGCGAAATCGAGGCGCTCCAAATCCTTCAAGGTTCGCCTAATATCGTCGTTCTGCACGAGTACTTTTGGCGCGAAGATGAAGATGCCGTGCTTGTTCTCGAGTTTATGAGAACGGATTTGGCCACCGTTATAGCGGAGGCGAAGAAGCGAGGATCGGACGGGGTAGAATCCGGGCGTGGACTAGCGGTCGGGGAGGTGAAACGGTGGATGATCCAGATTCTGAGTGGTCTTGATGCTTGTCATAGGAATATGATCGTGCATAGGGATTTGAAACCTAGCAATTTGTTGATATCCGATGATGGCGTGCTCAAGCTTGCCGATTTTGGACAGGCGAGAATACTCATGGAGCCTGAATATGTTGAACCAAATGGGATCTCTCAACCATGTGAGATGAACTCTTCAGATCAAGTACCTGCTTCTCAGCCCTCTGCAATTTTTCCTGGAACGGAAAGCTCGGTTCGAGAAGGTAACAGAATTGAAGAGCAAGAACCGATCGGCAAAGAGGAATATTTTAGCGATTTAGGCGAGCTGAAAGCAAAAAATTCAGCAAATGAATTTGACAAGGAAACATATACTTATGATGGAGATACATCTTGCTTAGCAACATGTACCACGAGTGACCTTGAAGATGATCCATTTAAAGGTTCATCATATTCTTATGAAATTGAAGGAGGAGTTCCAGCAGATGATGGTCAAGGTTCGCTTACTTCATGCGTTGGTACTCGCTGGTTCAGGGCTCCCGAATTACTCTATGGCTCAACGAGCTACGGTTTGGAGATCGACTTATGGTCGTTGGGCTGCATTTTTGCTGAACTTTTTACATTGGAACCCCTTTTTCCAGGAACTGCTGACATTGATCAAATGAGCAAAATTTTCACTACTCTTGGCAACTTGACTGAAGATTCATGGCCAGGTTGTTCTGAACTTCCTGATTTCCATATTATATCATTCAACACAATAGAAAAGCCAATCGGTTTAGAAGCATGTCTTCCCAACTGCTCTCCTGATGAAATTTCTATCGTTAAAAGACTGCTTCGTTACGACCCGGCTAACCGAGCGACTGCCATGGAATTGCTCCAAGATAAGTATTTCACTGAGGATCCATCCCCAGTTCCGTTGGCTGAGCTTCGTGTTCCTTTGACCAGAAGTGGACAGGACGAGGATTCTCCTGCTGGATGGTACGATTACGATGAGTCCGATTCCGATATGGATGAACTCGGCCCCATGAACGTTACCACCAGTGCCACTGGTTACTCCATACAATTTGATTGA 1449 47.07 MESPPAKSWSIHTRPDIIQKYQILERVGSGAYSDVHRARRLSDGVIVALKEIHDYQSAFREIEALQILQGSPNIVVLHEYFWREDEDAVLVLEFMRTDLATVIAEAKKRGSDGVESGRGLAVGEVKRWMIQILSGLDACHRNMIVHRDLKPSNLLISDDGVLKLADFGQARILMEPEYVEPNGISQPCEMNSSDQVPASQPSAIFPGTESSVREGNRIEEQEPIGKEEYFSDLGELKAKNSANEFDKETYTYDGDTSCLATCTTSDLEDDPFKGSSYSYEIEGGVPADDGQGSLTSCVGTRWFRAPELLYGSTSYGLEIDLWSLGCIFAELFTLEPLFPGTADIDQMSKIFTTLGNLTEDSWPGCSELPDFHIISFNTIEKPIGLEACLPNCSPDEISIVKRLLRYDPANRATAMELLQDKYFTEDPSPVPLAELRVPLTRSGQDEDSPAGWYDYDESDSDMDELGPMNVTTSATGYSIQFD 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11736841 11739272 - Carg10857-RA Car05g01260 149646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01260 482 MobiDBLite consensus disorder prediction 438 471 - -
Car05g01260 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Car05g01260 482 Pfam Protein kinase domain 21 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g01260 482 Pfam Protein kinase domain 291 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g01260 482 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Car05g01260 482 ProSiteProfiles Protein kinase domain profile. 21 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g01260 Car12g01227 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g01260 Car-Chr5:11736841 Car05g00063 Car-Chr5:334121 2.11E-16 dispersed
Car12g01227 Car-Chr12:11666806 Car05g01260 Car-Chr5:11736841 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88902 PF00069 Pkinase 6.20E-32 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01260 - - csv:101209606 865.144