Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car05g01271 | ATGTCCAACGCCACCGTGCCGGAGTCCGACTCCGGCGGCTCCAATTCTTCCTCCTCCACTTCCTCCTCTTCCTTTTCAACTTCATGTTCCATCTCGTCTCCAACGAAAAAAGCCGGTGGCTGCCGGCCAAAGCGCGCGCGGGAAATCACCACCAACAGTCGCCACCCAATTTACCGCGGCGTCCGAATGAGGGCGTGGGGAAAATGGGTGTCGGAAATTCGAGAGCCAAAGAAGAAGAGCCGGATCTGGCTCGGCACCTTCGCCACACCCGACATGGCAGCACGTGCCCACGACGTAGCCGCCCTAACCATCAAAGGCAACTCCGCTATCCTCAACTTCCCCGAACTCGCCGCGTCACTCCCACGCCCCGCTTCCTCCTCCCCTCGCGACGTCCAATCCGCCGCCGCTCTCGCCGCCTCAATGCAACTCCCTAACGCCCCACCTCCACCCCCACCGCCACCACCACCCTCATCGCCTCCATTTACGTCATCGTCGGAGTTGGACGAGTCGACGCCGGAGGAACTGAGTGAAATCGTAGTACTGCCGTGTTTGGGAACGAGTTACGAGGAATCATCCGAGTCAGTGACCGAGTTAGTGTTCGACGAGTGGCAATATGGGCTTTGGGATCAAAATCAAAGCTCAAAAGAAGAAGAAGAAGAAGCTTATGAGTTCTTCATAGATCAAATGGCAATCGCGGAAAAATCATTTCAAGCTTTACCCTTCTCGTGGTAA | 732 | 56.42 | MSNATVPESDSGGSNSSSSTSSSSFSTSCSISSPTKKAGGCRPKRAREITTNSRHPIYRGVRMRAWGKWVSEIREPKKKSRIWLGTFATPDMAARAHDVAALTIKGNSAILNFPELAASLPRPASSSPRDVQSAAALAASMQLPNAPPPPPPPPPPSSPPFTSSSELDESTPEELSEIVVLPCLGTSYEESSESVTELVFDEWQYGLWDQNQSSKEEEEEAYEFFIDQMAIAEKSFQALPFSW | 243 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 11800091 | 11800822 | + | Carg10846-RA | Car05g01271 | 149657 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car05g01271 | 243 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| Car05g01271 | 243 | Pfam | AP2 domain | 56 | 106 | IPR001471 | GO:0003700|GO:0006355 | |
| Car05g01271 | 243 | MobiDBLite | consensus disorder prediction | 142 | 174 | - | - | |
| Car05g01271 | 243 | ProSiteProfiles | AP2/ERF domain profile. | 57 | 114 | IPR001471 | GO:0003700|GO:0006355 | |
| Car05g01271 | 243 | MobiDBLite | consensus disorder prediction | 143 | 161 | - | - | |
| Car05g01271 | 243 | MobiDBLite | consensus disorder prediction | 1 | 53 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car03g00872 | Car-Chr3:6969206 | Car05g01271 | Car-Chr5:11800091 | 2.15E-24 | dispersed | |
| Car05g00144 | Car-Chr5:721418 | Car05g01271 | Car-Chr5:11800091 | 4.41E-24 | dispersed | |
| Car05g01271 | Car-Chr5:11800091 | Car09g00561 | Car-Chr9:3186595 | 1.99E-53 | dispersed | |
| Car09g01073 | Car-Chr9:9777498 | Car05g01271 | Car-Chr5:11800091 | 4.71E-30 | dispersed | |
| Car09g01125 | Car-Chr9:11729544 | Car05g01271 | Car-Chr5:11800091 | 7.27E-33 | dispersed | |
| Car10g00596 | Car-Chr10:3011050 | Car05g01271 | Car-Chr5:11800091 | 6.03E-70 | wgd | |
| Car11g00522 | Car-Chr11:2808630 | Car05g01271 | Car-Chr5:11800091 | 3.58E-54 | wgd | |
| Car12g01235 | Car-Chr12:11712853 | Car05g01271 | Car-Chr5:11800091 | 3.89E-92 | wgd | |
| Car14g01146 | Car-Chr14:10096742 | Car05g01271 | Car-Chr5:11800091 | 9.66E-45 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 3612 | PF00847 | AP2 | 1.20E-12 | CL0081 | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car05g01271 | K09286 | - | csv:101212945 | 302.367 |