Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01287 ATGAAGATCAAGACGCCATTGAAGCAGCTCAAGCTCTCTGTGCCTGTTCAAGAAACTACCATCCGTTCTTTCCTGACTGCGAGTGGAACATTTCACGACGGCAATCTGCTACTGAACCAGAAAGGATTGCGGCTTATATCTGAAGAGAAAGAAGCAGAGATTTCAGATTGTAAGGAACTTGATGTCGATTTCTCATTGGAAGATCTTGAGACTGTGAATGTTATCGGGAAAGGAAGTGGTGGTGTAGTGCAACTTGTTCGACACAAATGGGTTGGAAAACTTTTCGCCTTAAAGGTGATCCAGATGAACATACAAGAGGATATCCGTAAGCAGATCGTGCAGGAACTGAAAATAAATCAAGCAGCCCAATGTCCACATATAGTGGTTTGTTACCATTCTTTCTACCATAATGGTGCAATTTCTCTGGTGCTAGAATACATGGATCGTGGTTCTTTAGCCGACATAGTCAGACAAGTCCGAACAATTCTGGAACCATATCTTGCAGTTGTTTGTAAACAGGTTCTACAAGGTCTTGTTTATTTGCATCATGAGAGACATGTTATACATAGAGACATCAAGCCATCCAATCTACTTGTGAACCATAAAGGGGAGGTTAAAATCACTGATTTTGGAGTAAGTGCAATGCTAGCTAGTTCTATGGGTCAGAGAGATACATTTGTGGGAACTTACAATTACATGTCGCCTGAGCGAATTAGCGGCGGAACATATGACTACAGCAGTGATATATGGAGCTTGGGCATGGTGGTACTTGAATGTGCCATTGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTGCTTGAGGCAATTGTAGCGAAGCCGCCGCCTTCTGCTCCACCGGATCAATTCTCCCCCGAGTTCTGTTCCTTCGTATCCTCATGCATTAAAAAGGACCCTAAAGAAAGATCAGCATCATTAGATCTTCTGAATCATCCTTTCATCAAGAAATTCGAAGATAAAGACATCGATCTCGGGATTCTCGTAGGCAGCTTGGATCCTCCTGTAAGTTTTCCCAGATAA 1065 42.72 MKIKTPLKQLKLSVPVQETTIRSFLTASGTFHDGNLLLNQKGLRLISEEKEAEISDCKELDVDFSLEDLETVNVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCYHSFYHNGAISLVLEYMDRGSLADIVRQVRTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGMVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFVSSCIKKDPKERSASLDLLNHPFIKKFEDKDIDLGILVGSLDPPVSFPR 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11892559 11895506 - Carg10830-RA Car05g01287 149673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01287 354 Pfam Protein kinase domain 70 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g01287 354 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Car05g01287 354 ProSiteProfiles Protein kinase domain profile. 69 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g01287 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g01287 Car12g01246 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g01287 Car-Chr5:11892559 Car10g00666 Car-Chr10:3423175 1.97E-159 dispersed
Car14g00608 Car-Chr14:3382833 Car05g01287 Car-Chr5:11892559 7.37E-80 transposed
Car12g01246 Car-Chr12:11767614 Car05g01287 Car-Chr5:11892559 1.54E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88904 PF00069 Pkinase 1.40E-65 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01287 K04368 - csv:101218848 677.167