Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car05g01288 | ATGTCGTGGCAAGTGTACGTCGACGATCATTTGATGTGCGATATTGAGGGCAATCACCTCTCATCTGCAGCCATTATCGGCCATGACGGCAGCGTTTGGGCCCAAAGCGAAACTTTCCCCAAGTTCAAGCCTGAAGAAATTGCTGCCATCATGAATGACTTCAGTGAGCCCGGGACGCTTGCTCCAACTGGTTTGTATCTTGGTGGCTCAAAGTATATGGTAATCCAAGGGGAGCCTGGAGCTGTTATTCGTGGGAAGAAGGGCCCAGGTGGGGTTACTGTTAAGAAGACTGGTCTGGCTCTAGTCATTGGCATCTATGATGAACCAATGACTCCTGGTCAGTGCAATATGATCGTTGAAAGGCTTGGGGATTATCTCGTCGACCAGGGGGAACCGCCTATTGTGTACAAGTCTATGGACTCTTGA | 426 | 49.77 | MSWQVYVDDHLMCDIEGNHLSSAAIIGHDGSVWAQSETFPKFKPEEIAAIMNDFSEPGTLAPTGLYLGGSKYMVIQGEPGAVIRGKKGPGGVTVKKTGLALVIGIYDEPMTPGQCNMIVERLGDYLVDQGEPPIVYKSMDS | 141 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 11896092 | 11898875 | - | Carg10829-RA | Car05g01288 | 149674 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car05g01288 | 141 | ProSitePatterns | Profilin signature. | 1 | 8 | IPR027310 | GO:0003779 | |
| Car05g01288 | 141 | Pfam | Profilin | 1 | 130 | IPR005455 | GO:0003779 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car05g01288 | Car-Chr5:11896092 | Car12g01245 | Car-Chr12:11761833 | 3.62E-73 | dispersed | |
| Car05g01288 | Car-Chr5:11896092 | Car05g01289 | Car-Chr5:11899911 | 2.47E-76 | tandem | |
| Car01g00075 | Car-Chr1:421448 | Car05g01288 | Car-Chr5:11896092 | 3.85E-74 | wgd | |
| Car14g01139 | Car-Chr14:10038186 | Car05g01288 | Car-Chr5:11896092 | 7.19E-73 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car05g01288 | K05759 | - | qsu:111995052 | 239.965 |