Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01330 ATGGATGGGGGAGTAGCTTACAATCCTCGGACTGTGGAAGAGGTTTTCAGGGACTTTAAGGGCCGTCGTGCTGGAATGATTAGAGCTCTCACCACCGGTCTTGTTCAATCTCACTTTTCCTTCTCCTCCTCATCTATTTCTATGTCGTGGAATTTTATCAGCTTTGCGACCCTGCTGTTTCAAATTTCAGAGAAGGAAAACCTCTGCCTATATGGACTCCCTAATGAACAGTGGGAAGTTAATTTGCCTGCGGAAGAAGTACCTCCAGAGGTTCCGGAACCAGCATTGGGCATTAACTTTGCTAGAGATGGGATGCAAAAAAAGGATTGGCTATCCCTTGTTGCCGTTCATAGTGACGCATGGCTTCTTGCTGTGGCTTTCTATTTTGGTTCTAGATTTGGCTGTGATAAATCTGACAGGAGACGCCTCTTTACGATGATAAATGATCTGCCCACTATATTTGAGGTTGTGACGGGAAGTGTGAAGAAACAGGGAAAAGACAAGTCATTGGTTTCAAATAACAGCAGCAGCAAATCCAGGACTGGCCCAAAGGGGAGAGATTCTGAATCGAGCAAGTTGTCTAATGGGTTGGCAAAAGATGAAGACGAGGGACTGAATGAGGAAGCTGAGGAGGAGCACGGGGAGACTTTATGTGGGGCATGCGGGGAGAATTATGCATCGGACGAGTTTTGGATATGTTGTGACATATGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCAAGGGCCGAACATATCAAGCAATACAAATGCCCCTCGTGCAGCAATAAGAGGGCACGGCCCTGA 816 46.81 MDGGVAYNPRTVEEVFRDFKGRRAGMIRALTTGLVQSHFSFSSSSISMSWNFISFATLLFQISEKENLCLYGLPNEQWEVNLPAEEVPPEVPEPALGINFARDGMQKKDWLSLVAVHSDAWLLAVAFYFGSRFGCDKSDRRRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSSKSRTGPKGRDSESSKLSNGLAKDEDEGLNEEAEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12078700 12081124 + Carg10786-RA Car05g01330 149716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01330 271 MobiDBLite consensus disorder prediction 182 202 - -
Car05g01330 271 ProSiteProfiles Zinc finger PHD-type profile. 215 267 IPR019787 -
Car05g01330 271 MobiDBLite consensus disorder prediction 165 209 - -
Car05g01330 271 MobiDBLite consensus disorder prediction 165 181 - -
Car05g01330 271 Pfam Alfin 64 159 IPR021998 GO:0006355|GO:0042393
Car05g01330 271 ProSitePatterns Zinc finger PHD-type signature. 218 264 IPR019786 -
Car05g01330 271 Pfam PHD-finger 218 267 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g01330 Car-Chr5:12078700 Car12g00605 Car-Chr12:4025006 3.93E-114 dispersed
Car12g01285 Car-Chr12:11936906 Car05g01330 Car-Chr5:12078700 2.68E-133 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3616 PF12165 Alfin 1.00E-48 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01330 - - rcu:8272513 397.897