Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01342 ATGGCGGTGAAGAAAATGAAGTGGAGATCCATTTTCTCCAGCTGCTGCGAGGTGGAGTCGCCGTCGTCGTCGGAGGTCATCAAACCGGTGGCGCCGAGTAAGCCCGGTTCCTTTGGAAGGATTCCCAAACTGGATTTAACCAACCCTAACTCCACCCTCTCTGAGGACCTCTCTATCTCTCTCGCCGGATCTGACATCCACGCCTTCTCCCTCGCCGAGTTGAAGCTCGTCTCTCACTCATTTTCCTCCTCCAACTTCCTCGGAGAGGGTGGCTTCGGCCCTGTCTACAAAGGCTTTATCGATGATACTCTTAGACCTGGCTTGCTCCCTCAGCCCGTCGCTATTAAACTCCTCGATTTGGATGGAACCCAAGGCCACAGGGAGTGGCTGACGGAGGTGATTTTCCTAGGGCAACTTAAGCACGCCCATCTCGTCAAGCTGATTGGTTATTGCTGCGAAGACGAACACCGGATGCTTGTCTATGAGTATATGCCCAGAGGAAGCTTGGAGAATCAGCTTTTCAAAAAATATTCGATCCCATTGCCGTGGTCGACGAGAATGAAGATCGCTCTTGGAGCTGCGAAGGGTCTGGCGTTCCTCCACGAAGCAGATAAGCCAGTAATTTACCGAGATTTCAAAGCTTCCAACATACTGCTCGATTCTGATTATACTGCGAAACTGTCTGATTTCGGTCTGGCCAAAGACGGTCCAGAAGGAGACAACACGCACGTCTCCACTCGAGTAATGGGCACGCATGGATATGCAGCGCCGGAGTATATAATGACTGGGCATTTGACGGCGATGAGTGATGTATATAGCTTCGGAGTAGTGCTTTTGGAGCTGCTAACAGGGCGGAGGTCGGTGGAGAAGAGCAGCCGTAAGAGGCAGCAGAACTTGGCAGAATGGGCAAGGCCGATGCTGAACGATCCCAGGAAGCTAAGCCGTTTAATAGACCCGAGACTTGAAGGCCAATACTCTGAAATGGGATCTCAGAAAGCAGCCTCATTGGCGTACCAGTGCTTAAGCCACCGCCCAAAGCAGAGGCCCACCATGAGCGCCGTCGTGAAGGTATTAGAGCCACTCAAGGATTTCGATGACATTTCTGCAGGCACCTTCGTTTACACGGTTGTGTCCCAGGACGATGCCCGCAAGAAACGAACGGGAAATTGTAGTGCAGAAGAAGCCATTCCATCCACCTGA 1200 52.08 MAVKKMKWRSIFSSCCEVESPSSSEVIKPVAPSKPGSFGRIPKLDLTNPNSTLSEDLSISLAGSDIHAFSLAELKLVSHSFSSSNFLGEGGFGPVYKGFIDDTLRPGLLPQPVAIKLLDLDGTQGHREWLTEVIFLGQLKHAHLVKLIGYCCEDEHRMLVYEYMPRGSLENQLFKKYSIPLPWSTRMKIALGAAKGLAFLHEADKPVIYRDFKASNILLDSDYTAKLSDFGLAKDGPEGDNTHVSTRVMGTHGYAAPEYIMTGHLTAMSDVYSFGVVLLELLTGRRSVEKSSRKRQQNLAEWARPMLNDPRKLSRLIDPRLEGQYSEMGSQKAASLAYQCLSHRPKQRPTMSAVVKVLEPLKDFDDISAGTFVYTVVSQDDARKKRTGNCSAEEAIPST 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12122848 12125026 + Carg10774-RA Car05g01342 149728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01342 399 Pfam Protein tyrosine and serine/threonine kinase 85 358 IPR001245 GO:0004672|GO:0006468
Car05g01342 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Car05g01342 399 ProSiteProfiles Protein kinase domain profile. 81 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g01342 Car10g00689 CCT
Car05g01342 Car11g00610 CCT
Car05g01342 Car11g00610 ECH
Car05g01342 Car10g00689 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01311 Car-Chr1:11756567 Car05g01342 Car-Chr5:12122848 9.77E-161 dispersed
Car05g01342 Car-Chr5:12122848 Car09g00319 Car-Chr9:1777465 8.83E-162 dispersed
Car16g00465 Car-Chr16:2949967 Car05g01342 Car-Chr5:12122848 9.17E-153 transposed
Car10g00689 Car-Chr10:3575767 Car05g01342 Car-Chr5:12122848 0 wgd
Car11g00610 Car-Chr11:3335484 Car05g01342 Car-Chr5:12122848 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88907 PF07714 PK_Tyr_Ser-Thr 2.70E-47 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01342 - - csv:101209441 698.353