Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01348 ATGTCTGAGTTGTTTTCACTCGCCTACATGCGCTTAGGGATGAAAGCTCCCCCAAATGGGTTTCTGCCCAATTCTGGAGAAGGTGAAAGGAAGAACATCAATTCTGAGCTATGGCATGCTTGTGCTGGGCCTCTTGTTTCGTTACCTCCAGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGCCACAGTGAACAAGTTGCAGCTTCGATGAATAAGGAGACTGATTTCATTCCAAGCTACCCTAACCTTCCTTCTAAGTTGATCTGCATGCTCCATAACGTCACGTTACATGCTGATCTTGAAACGGATGAAGTGTATGCACAAATGACCCTTCAACCAGTGAATAAATACGAAAAAGAAGGTTTATTGGCATCTGATATTGGCCTCAAGCAAAACAGGCAGCCTGCTGAATTCTTCTGTAAAACTCTAACAGCTAGCGACACCAGCACTCACGGTGGATTTTCTGTGCCTCGTCGTGCAGCTGAGAAGATTTTTCCCCCATTAGACTACTCGATGCAACCCCCTGCTCAGGAACTAGTGGCTAGAGATTTGCATGATAATTCATGGACATTCAGACATATTTACCGCGGCCAACCAAAAAGACACCTTCTGACCACTGGTTGGAGTGTTTTTGTCAGCACAAAACGACTCTTTGCTGGAGATTCGGTGCTCTTTATAAGAGATGAAAAGTCACAGCTTCTCTTAGGCATAAGGCGTGCTAACAGGCAGCAGCCAGCTCTGTCTTCATCAGTCATATCAAGTGATAGCATGCACATAGGAATTCTTGCTTCTGCTGCTCATGCAGCTGCAAATAACAGTCCTTTTACCATATTTTACAATCCTAGGGCCAGTCCTTCTGAATTTGTGATTCCTTTGGCCAAGTATAATAAGGCAATGTATGCACAAGTTTCCCTTGGCATGCGATTTAGGATGATGTTTGAAACCGAGGAGTCGGGAGTACGTAGATATATGGGTACAATTACTGGTATCAGTGACATGGATTCCGTACGATGGAAAAATTCACAATGGCGCAATCTTCAGGTCGGATGGGATGAATCGGCAGCTGGTGAACGACCAAACCGAGTTTCAATATGGGAGGTTGAGCCTGTTGTGACTCCTTTTTACATATGTCCACCTCCATTCTTCAGGCCCAAATTCCCTAAACAACCAGGGATGCCAGACGATGAATCTGAGATTGAAAATGCTTTTAAGAGAGCGATGCCATGGTTTGGTGATGAGTTCGGCATGAAAGATGCGTCAAGCTCGATCTTTCCTGGTTTAAGTTTAGTGCAGTGGATGAGCATGCAACATAATAATCAGTTCCCAGCAGCTCAATCTGGAATTTTGCCGTCCATGGTTGCTCCTAGTGCTCTGCATGGAACTCTTACTAATGATGAGTCATCCAAATTATTGAGTTTTCAAGCACCACTAATGTCTTCGCCAAATCTCCAATTCAGCAAAGCAAATCAACAGAACCAAGTTGCCCAGTTGCCACCGACTACGTGGTCTCAACAGCAGCAGGTGCAGCAGTTGTTACAAGTTCCTGCTAGCCAACAGTTGCAGCAGCAGCAGCAGCAGCAGCAGTTGCCACTCCAGCAGGAGCTGCAGCAGCAGGTGCCCCAGCAGCAGCAACTCCAGATGCAACAGCCACAACGACAACAGCAGACCTCCCAATCTGCTCTTCTGAACAACAGTGTTACTGCTCCGAACCATTTGCCAAATCAGACTTTGCAACAACCGCTTGTATACTCTCAGCTACAACAACAGCAATTGCTTGCAGGCAATATACAATCACATCAAACTAGCCAACCATCCAATAAAAACTTATTTCAGACTACATCTTTATCACAAGAAGTACAGTTTCAGCCACAAATAGAGCAGCAACCTAGTCTTCTTCCGAAACACCAGCAGCCAACACAAGTTCAACAGGCCCCACTACAGTTAATGCAACAAAGTCTGTCTCAGAGAGCACAACAACAGCCACAAGTTCAGCAATTTTCACAGCCAGTCCCAACAGAGCAACAACTTCAATTACAGCTGCTACAGAAGCTGCAGCCGCAGCAGCAGCATCCGTTGCTCTCCCCAGCTAGCCCACTGTTACCACCTCAGATGCTACAGCAGCAGAATGTTCATCAGCAAAACCAGCAGTTACCACCATTGCCTTTGTCCAATCAGCAGCAGTTCAATACTAGTGGAGGCAGCTTACAAACAGAAAAACATAACAGCAATGGCTTTTCAAGTTTAGGCCTCATGCAGTCCCAGCAGGCTCCTATAACCCATTCCCATAACCAATTCGAAACCAACCATGGCAATTAG 2316 45.81 MSELFSLAYMRLGMKAPPNGFLPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPSYPNLPSKLICMLHNVTLHADLETDEVYAQMTLQPVNKYEKEGLLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILASAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYAQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQVGWDESAAGERPNRVSIWEVEPVVTPFYICPPPFFRPKFPKQPGMPDDESEIENAFKRAMPWFGDEFGMKDASSSIFPGLSLVQWMSMQHNNQFPAAQSGILPSMVAPSALHGTLTNDESSKLLSFQAPLMSSPNLQFSKANQQNQVAQLPPTTWSQQQQVQQLLQVPASQQLQQQQQQQQLPLQQELQQQVPQQQQLQMQQPQRQQQTSQSALLNNSVTAPNHLPNQTLQQPLVYSQLQQQQLLAGNIQSHQTSQPSNKNLFQTTSLSQEVQFQPQIEQQPSLLPKHQQPTQVQQAPLQLMQQSLSQRAQQQPQVQQFSQPVPTEQQLQLQLLQKLQPQQQHPLLSPASPLLPPQMLQQQNVHQQNQQLPPLPLSNQQQFNTSGGSLQTEKHNSNGFSSLGLMQSQQAPITHSHNQFETNHGN 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12143560 12147697 - Carg10768-RA Car05g01348 149734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01348 771 MobiDBLite consensus disorder prediction 707 748 - -
Car05g01348 771 ProSiteProfiles B3 DNA-binding domain profile. 139 241 IPR003340 GO:0003677
Car05g01348 771 Pfam B3 DNA binding domain 139 240 IPR003340 GO:0003677
Car05g01348 771 Pfam Auxin response factor 265 347 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01531 Car-Chr1:12880926 Car05g01348 Car-Chr5:12143560 3.10E-172 dispersed
Car05g00429 Car-Chr5:2460737 Car05g01348 Car-Chr5:12143560 3.07E-58 dispersed
Car05g00686 Car-Chr5:4583465 Car05g01348 Car-Chr5:12143560 1.29E-51 dispersed
Car05g01348 Car-Chr5:12143560 Car12g00878 Car-Chr12:8687736 0 dispersed
Car12g01299 Car-Chr12:12002386 Car05g01348 Car-Chr5:12143560 4.16E-43 transposed
Car12g01300 Car-Chr12:12002823 Car05g01348 Car-Chr5:12143560 6.23E-53 transposed
Car12g01298 Car-Chr12:11997221 Car05g01348 Car-Chr5:12143560 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3618 PF02362 B3 1.70E-20 CL0405 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01348 K14486 - csv:101210917 1095.49