Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car06g00004 | ATGGAGCAGACTACTGAACATCCTCCCATTCCCATCCCTTTAAATGCTCGCTATGGCGGCCACCACCACCATGACCCCTCTGCCACCTGCAACCACATCATTGCCGCCGCATCTGCGGTCAATGGCGGCAATCCACTCCCACCCTTCCACATGGAAATAGATCTCCACCGTAATAACAACAACAGCAACAATAACAAGAAGCATGTCAAATACAAAGAGTGCCTCAAAAACTATGCTGCCTCCATGGGAGGAAATGCCACGGATGGCTGCGGCGAGTTCATGCCTAGTGGAGAAGAAGGCTCTATTGAAGCACTCACATGCTCCGCGTGCAACTGCCATAGAAACTTCCATCGAAAAGAGATCGACCACCCCCTCCTCGGTCGCAAGCTTCTCGTTGGAGGTAAGAACATGATCGCCATGCCTGAGACCACCACGTTCGCCTACCCAACTGCGGCGGGGGCGGCGTTCCTATCATCCAGAGCAATGACAGCACAACCCCACCACATGATAATGCCGTACAACATGCTTGGCGGGGGCGGTGAGGAGCAGGAGGAGGCAGCAGGGGTGAGGGCGTACTCGGGGCAAATGACGAACAAGAAGCGATTCCGAACGAAGTTCACGGGGGAGCAGAAGGAGAGGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAGAAGGAAGAGGAGAGTGTGGTGCAACAATTGTGTGAAGAGATTGGAGTGAAGAGGAGAGTTCTTAAGGTTTGGATGCATAACAACAAGCACAATCTTGGCACCAAGGAAACTACTTCCCCTTCCCCTTCCCATTCTCCCACTCCCTTGGATTAA | 831 | 52.71 | MEQTTEHPPIPIPLNARYGGHHHHDPSATCNHIIAAASAVNGGNPLPPFHMEIDLHRNNNNSNNNKKHVKYKECLKNYAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIDHPLLGRKLLVGGKNMIAMPETTTFAYPTAAGAAFLSSRAMTAQPHHMIMPYNMLGGGGEEQEEAAGVRAYSGQMTNKKRFRTKFTGEQKERMLRFAEKVGWKIQKEEESVVQQLCEEIGVKRRVLKVWMHNNKHNLGTKETTSPSPSHSPTPLD | 276 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 53289 | 54119 | + | Carg01306-RA | Car06g00004 | 149740 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car06g00004 | 276 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Car06g00004 | 276 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 71 | 120 | IPR006456 | - | |
Car06g00004 | 276 | MobiDBLite | consensus disorder prediction | 257 | 276 | - | - | |
Car06g00004 | 276 | Pfam | ZF-HD protein dimerisation region | 69 | 121 | IPR006456 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car04g01920 | Car-Chr4:11409919 | Car06g00004 | Car-Chr6:53289 | 1.89E-136 | dispersed | |
Car06g00004 | Car-Chr6:53289 | Car07g00499 | Car-Chr7:2500572 | 8.07E-54 | dispersed | |
Car06g00004 | Car-Chr6:53289 | Car12g00442 | Car-Chr12:2802897 | 4.22E-58 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
3619 | PF04770 | ZF-HD_dimer | 8.20E-29 | No_clan | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car06g00004 | - | - | bhj:120068944 | 404.06 |