Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00004 ATGGAGCAGACTACTGAACATCCTCCCATTCCCATCCCTTTAAATGCTCGCTATGGCGGCCACCACCACCATGACCCCTCTGCCACCTGCAACCACATCATTGCCGCCGCATCTGCGGTCAATGGCGGCAATCCACTCCCACCCTTCCACATGGAAATAGATCTCCACCGTAATAACAACAACAGCAACAATAACAAGAAGCATGTCAAATACAAAGAGTGCCTCAAAAACTATGCTGCCTCCATGGGAGGAAATGCCACGGATGGCTGCGGCGAGTTCATGCCTAGTGGAGAAGAAGGCTCTATTGAAGCACTCACATGCTCCGCGTGCAACTGCCATAGAAACTTCCATCGAAAAGAGATCGACCACCCCCTCCTCGGTCGCAAGCTTCTCGTTGGAGGTAAGAACATGATCGCCATGCCTGAGACCACCACGTTCGCCTACCCAACTGCGGCGGGGGCGGCGTTCCTATCATCCAGAGCAATGACAGCACAACCCCACCACATGATAATGCCGTACAACATGCTTGGCGGGGGCGGTGAGGAGCAGGAGGAGGCAGCAGGGGTGAGGGCGTACTCGGGGCAAATGACGAACAAGAAGCGATTCCGAACGAAGTTCACGGGGGAGCAGAAGGAGAGGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAGAAGGAAGAGGAGAGTGTGGTGCAACAATTGTGTGAAGAGATTGGAGTGAAGAGGAGAGTTCTTAAGGTTTGGATGCATAACAACAAGCACAATCTTGGCACCAAGGAAACTACTTCCCCTTCCCCTTCCCATTCTCCCACTCCCTTGGATTAA 831 52.71 MEQTTEHPPIPIPLNARYGGHHHHDPSATCNHIIAAASAVNGGNPLPPFHMEIDLHRNNNNSNNNKKHVKYKECLKNYAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIDHPLLGRKLLVGGKNMIAMPETTTFAYPTAAGAAFLSSRAMTAQPHHMIMPYNMLGGGGEEQEEAAGVRAYSGQMTNKKRFRTKFTGEQKERMLRFAEKVGWKIQKEEESVVQQLCEEIGVKRRVLKVWMHNNKHNLGTKETTSPSPSHSPTPLD 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 53289 54119 + Carg01306-RA Car06g00004 149740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00004 276 MobiDBLite consensus disorder prediction 1 23 - -
Car06g00004 276 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 71 120 IPR006456 -
Car06g00004 276 MobiDBLite consensus disorder prediction 257 276 - -
Car06g00004 276 Pfam ZF-HD protein dimerisation region 69 121 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01920 Car-Chr4:11409919 Car06g00004 Car-Chr6:53289 1.89E-136 dispersed
Car06g00004 Car-Chr6:53289 Car07g00499 Car-Chr7:2500572 8.07E-54 dispersed
Car06g00004 Car-Chr6:53289 Car12g00442 Car-Chr12:2802897 4.22E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3619 PF04770 ZF-HD_dimer 8.20E-29 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00004 - - bhj:120068944 404.06