Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00004 ATGGAGCAGACTACTGAACATCCTCCCATTCCCATCCCTTTAAATGCTCGCTATGGCGGCCACCACCACCATGACCCCTCTGCCACCTGCAACCACATCATTGCCGCCGCATCTGCGGTCAATGGCGGCAATCCACTCCCACCCTTCCACATGGAAATAGATCTCCACCGTAATAACAACAACAGCAACAATAACAAGAAGCATGTCAAATACAAAGAGTGCCTCAAAAACTATGCTGCCTCCATGGGAGGAAATGCCACGGATGGCTGCGGCGAGTTCATGCCTAGTGGAGAAGAAGGCTCTATTGAAGCACTCACATGCTCCGCGTGCAACTGCCATAGAAACTTCCATCGAAAAGAGATCGACCACCCCCTCCTCGGTCGCAAGCTTCTCGTTGGAGGTAAGAACATGATCGCCATGCCTGAGACCACCACGTTCGCCTACCCAACTGCGGCGGGGGCGGCGTTCCTATCATCCAGAGCAATGACAGCACAACCCCACCACATGATAATGCCGTACAACATGCTTGGCGGGGGCGGTGAGGAGCAGGAGGAGGCAGCAGGGGTGAGGGCGTACTCGGGGCAAATGACGAACAAGAAGCGATTCCGAACGAAGTTCACGGGGGAGCAGAAGGAGAGGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAGAAGGAAGAGGAGAGTGTGGTGCAACAATTGTGTGAAGAGATTGGAGTGAAGAGGAGAGTTCTTAAGGTTTGGATGCATAACAACAAGCACAATCTTGGCACCAAGGAAACTACTTCCCCTTCCCCTTCCCATTCTCCCACTCCCTTGGATTAA 831 52.71 MEQTTEHPPIPIPLNARYGGHHHHDPSATCNHIIAAASAVNGGNPLPPFHMEIDLHRNNNNSNNNKKHVKYKECLKNYAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIDHPLLGRKLLVGGKNMIAMPETTTFAYPTAAGAAFLSSRAMTAQPHHMIMPYNMLGGGGEEQEEAAGVRAYSGQMTNKKRFRTKFTGEQKERMLRFAEKVGWKIQKEEESVVQQLCEEIGVKRRVLKVWMHNNKHNLGTKETTSPSPSHSPTPLD 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 53289 54119 + Carg01306-RA Car06g00004 149740

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00004 276 MobiDBLite consensus disorder prediction 1 23 - -
Car06g00004 276 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 71 120 IPR006456 -
Car06g00004 276 MobiDBLite consensus disorder prediction 257 276 - -
Car06g00004 276 Pfam ZF-HD protein dimerisation region 69 121 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00004 - - - bhj:120068944 404.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01920 Car-Chr4:11409919 Car06g00004 Car-Chr6:53289 1.89E-136 dispersed
Car06g00004 Car-Chr6:53289 Car07g00499 Car-Chr7:2500572 8.07E-54 dispersed
Car06g00004 Car-Chr6:53289 Car12g00442 Car-Chr12:2802897 4.22E-58 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car05g00476 . 55 239 ZF-HD Transcription Factor Family AT4G24660 54.3 9.6e-50 194.1
Car12g00442 . 89 299 ZF-HD Transcription Factor Family AT4G24660 50.7 3.1e-48 189.1
Car04g00784 . 54 219 ZF-HD Transcription Factor Family AT4G24660 55.0 3.4e-47 185.7
Car04g01920 . 81 280 ZF-HD Transcription Factor Family AT2G02540 55.3 2.4e-51 199.9
Car06g00004 . 69 261 ZF-HD Transcription Factor Family AT2G02540 51.0 2.2e-49 193.4
Car04g01920 . 78 283 ZF-HD Transcription Factor Family AT1G14440 55.2 4.2e-56 215.7
Car06g00004 . 66 261 ZF-HD Transcription Factor Family AT1G14440 54.8 2.5e-53 206.5
Car07g00426 CST 120 322 ZF-HD Transcription Factor Family AT2G18350 56.4 1.4e-52 203.8
Car14g00535 . 11 261 ZF-HD Transcription Factor Family AT5G15210 52.5 7.3e-49 191.4
Car04g02663 . 6 246 ZF-HD Transcription Factor Family AT5G15210 50.2 2.8e-48 189.5
Car15g00270 . 36 258 ZF-HD Transcription Factor Family AT5G15210 54.6 5.8e-46 181.8
Car11g00862 . 13 289 ZF-HD Transcription Factor Family AT5G15210 50.4 1.4e-44 177.2
Car04g02663 . 16 260 ZF-HD Transcription Factor Family AT3G28920 54.5 5.5e-56 215.3
Car14g00535 . 22 249 ZF-HD Transcription Factor Family AT3G28920 59.5 7.1e-56 214.9
Car11g00862 . 23 255 ZF-HD Transcription Factor Family AT3G28920 60.4 4.3e-53 205.7
Car15g00270 . 35 260 ZF-HD Transcription Factor Family AT3G28920 57.6 6.2e-52 201.8
Car04g02663 . 25 252 ZF-HD Transcription Factor Family AT5G39760 53.8 4.3e-51 199.1
Car15g00270 . 37 264 ZF-HD Transcription Factor Family AT5G39760 56.2 4.8e-50 195.7
Car14g00535 . 30 254 ZF-HD Transcription Factor Family AT5G39760 55.8 2.4e-49 193.4
Car11g00862 . 31 283 ZF-HD Transcription Factor Family AT5G39760 61.0 4.5e-48 189.1
Car04g02663 . 56 249 ZF-HD Transcription Factor Family AT1G69600 53.9 7.7e-50 194.5
Car18g01061 . 1 185 ZF-HD Transcription Factor Family AT1G69600 52.3 1.0e-49 194.1
Car15g00270 . 70 261 ZF-HD Transcription Factor Family AT1G69600 51.0 9.5e-48 187.6
Car04g01920 . 81 280 ZF-HD Transcription Factor Family AT2G02540 55.3 2.4e-51 199.9
Car06g00004 . 69 261 ZF-HD Transcription Factor Family AT2G02540 51.0 2.2e-49 193.4
Car05g00476 . 55 239 ZF-HD Transcription Factor Family AT4G24660 54.3 9.6e-50 194.1
Car12g00442 . 89 299 ZF-HD Transcription Factor Family AT4G24660 50.7 3.1e-48 189.1
Car04g00784 . 54 219 ZF-HD Transcription Factor Family AT4G24660 55.0 3.4e-47 185.7
Car04g02663 . 25 252 ZF-HD Transcription Factor Family AT5G39760 53.8 4.3e-51 199.1
Car15g00270 . 37 264 ZF-HD Transcription Factor Family AT5G39760 56.2 4.8e-50 195.7
Car14g00535 . 30 254 ZF-HD Transcription Factor Family AT5G39760 55.8 2.4e-49 193.4
Car11g00862 . 31 283 ZF-HD Transcription Factor Family AT5G39760 61.0 4.5e-48 189.1
Car07g00426 CST 120 322 ZF-HD Transcription Factor Family AT2G18350 56.4 1.4e-52 203.8
Car04g02663 . 56 249 ZF-HD Transcription Factor Family AT1G69600 53.9 7.7e-50 194.5
Car18g01061 . 1 185 ZF-HD Transcription Factor Family AT1G69600 52.3 1.0e-49 194.1
Car15g00270 . 70 261 ZF-HD Transcription Factor Family AT1G69600 51.0 9.5e-48 187.6
Car14g00535 . 11 261 ZF-HD Transcription Factor Family AT5G15210 52.5 7.3e-49 191.4
Car04g02663 . 6 246 ZF-HD Transcription Factor Family AT5G15210 50.2 2.8e-48 189.5
Car15g00270 . 36 258 ZF-HD Transcription Factor Family AT5G15210 54.6 5.8e-46 181.8
Car11g00862 . 13 289 ZF-HD Transcription Factor Family AT5G15210 50.4 1.4e-44 177.2
Car04g01920 . 78 283 ZF-HD Transcription Factor Family AT1G14440 55.2 4.2e-56 215.7
Car06g00004 . 66 261 ZF-HD Transcription Factor Family AT1G14440 54.8 2.5e-53 206.5
Car04g02663 . 16 260 ZF-HD Transcription Factor Family AT3G28920 54.5 5.5e-56 215.3
Car14g00535 . 22 249 ZF-HD Transcription Factor Family AT3G28920 59.5 7.1e-56 214.9
Car11g00862 . 23 255 ZF-HD Transcription Factor Family AT3G28920 60.4 4.3e-53 205.7
Car15g00270 . 35 260 ZF-HD Transcription Factor Family AT3G28920 57.6 6.2e-52 201.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010486 1 0 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3619 PF04770 ZF-HD_dimer 8.20E-29 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00004 Car_Chr06 FPKM 22.212122 26.780445 28.703802 27.450857 13.389562 11.73256 13.811891 14.465043 18.204458 20.162128