Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00012 ATGGGGTTGCAAATTGGGGATCCAAATACGTGCATCAGGGGCTGCTGCTCCAGCAAATCCATTCCTCTTCATCTTCCACCTTCCGCATTTTCGCTCCTCTCCCCAATTGCCCGAGGGGCGGAGAGTACTGTGTATGAAGGAAGGTTGGATGGTAAACGAGTTGCTGTAAAGAAGCCCATCTTGTCTACTTCCGACGACTTGGACAACAAATTAGATCATCCAGGCATAGTAAAACTGATCGCAGTCAATGCGAGGCCACCGGACTACTTGTTTTTCTTCGAATTCTATGAGTTTCCGAATCTTGCGGAGAAATTGCATGCTGAAGAATGGAATCCGAGTATCAATCAGGTGCTCATGATCACTCTAGAGTTAGCAAAGGCTCTGCAATATTTGCATAACTTGGGGATTGTGCATAGGGATGTGAAACCAGCAAACGTTCTTCTTGGCAAAGATTTACGTCCATACTTGGCTGATTTTGGTTTAGCAGTACACCAGAAACATCTGAAAGGAATCTCCGCAGAAAACTGGAAGTCATCTGGGAAGCCAACAGGTGGTTTCTATAAGAAAAGCATGGTTGGGACACTCATTTATATGGCACCTGAGATATTGAGGAAGGAAATACATACAGACCTATCAGATGTCTACAGCTTTGGCATCTTAATGAATGAGCTTTTGACTGGTGTTGTTCCATATACTGATCTTCGAACTGAAGCACAGGCCCACACTGTACTGGAAATGAATTATACGGAGCAGCTGCTTACCGCAGCTATTGTTTCAGATGGCTTGCGTCCTGCTCTTCCTAATGATGAGTCTGGCGCACCATCAAGGTTGTTGTCACTTATACGCAGGTGCTGGGATGAAAATCCAAAAAATAGACCATCTTTTTCTGATATAGTTGTGGACCTAGAGTCAATTTGGGAGGACAGAAAGGGTTTAGAATCTGTCACCCCTATGCATCCCAAGTTGTGTGGTAGTGTTGTTAGTGATGCTAGTGAAAATGATTATGCATGTCAAGAAGATATTAATTGGTCAAATCAGGGTGTACAGTTTTCTAGAAAGGCTTCTAATGCAGATGGGTGTGCTGTGAATGTTTGGCTTGATTCCTCATCTGATCATTTGGCATACCGCCCAATACTTTCTTGGGGATCCTTTTCCACTTGTGGGAGGAGGGAGACCATGGAGGACTCTCATTTCCTCTTGCCTAACATGTGTAACAAAGAAGACATCCATGCTTTTGGAATCTTTGATGGTCATAGAGGTGCAGCAGCTGCTGAGTTTTCAGCTCAAGCTATTCCTGGATTCTTGCAAACGTCATGTTCCACAAGAAGTCCTGTGGATGCATTAAAGGAAGCATTTGTAAAAACAGATGTTGAGTTTAGAAAAGAACTCGATTTTTTTCGCAAATCCAAGAAAGTTAAACAGAAAGACTGGCATCCTGGTTGCACTTCTGCTGTTGCCCTAATTGTTAGAGACAGGCTTTTTGTTGCCAATGCTGGTGATTGCAGGACAATATTGTGTCGGGCTGGTGATCCCGTCGTTTTAAGTAAGGATCATGTCGCTAGTTGTGTCGAGGAGCGAGAGCGTGTCATCAGGGCTGGAGGGCAGGTGAAGTGGCAAGTTGATACATGGAGGGTTGGTCCGGCTGCTCTTCAGGTGACTCGTTCAATTGGCGACGATGATCTGAAGCCGGCTGTGAGTGCAGAACCTGAGATAACAGAAACTGTTCTGACTTCACAGGATGATTACCTGGTTATGGGGAGTGATGGACTATGGGATGCCCTGAGCAACTCTGAGGTGGTGGGTATCATCAGGGACACAGTGAAAGAAGCGGCAATGTGTTCAAAGCGGCTTGCAACAGAAGCAGTAGCCAGGGGGAGCAAGGATAACATTACGGTAATTGTTGTATTTTTACATCCGGTATGTACAGTAGAGAGAATTTATTAA 1944 44.86 MGLQIGDPNTCIRGCCSSKSIPLHLPPSAFSLLSPIARGAESTVYEGRLDGKRVAVKKPILSTSDDLDNKLDHPGIVKLIAVNARPPDYLFFFEFYEFPNLAEKLHAEEWNPSINQVLMITLELAKALQYLHNLGIVHRDVKPANVLLGKDLRPYLADFGLAVHQKHLKGISAENWKSSGKPTGGFYKKSMVGTLIYMAPEILRKEIHTDLSDVYSFGILMNELLTGVVPYTDLRTEAQAHTVLEMNYTEQLLTAAIVSDGLRPALPNDESGAPSRLLSLIRRCWDENPKNRPSFSDIVVDLESIWEDRKGLESVTPMHPKLCGSVVSDASENDYACQEDINWSNQGVQFSRKASNADGCAVNVWLDSSSDHLAYRPILSWGSFSTCGRRETMEDSHFLLPNMCNKEDIHAFGIFDGHRGAAAAEFSAQAIPGFLQTSCSTRSPVDALKEAFVKTDVEFRKELDFFRKSKKVKQKDWHPGCTSAVALIVRDRLFVANAGDCRTILCRAGDPVVLSKDHVASCVEERERVIRAGGQVKWQVDTWRVGPAALQVTRSIGDDDLKPAVSAEPEITETVLTSQDDYLVMGSDGLWDALSNSEVVGIIRDTVKEAAMCSKRLATEAVARGSKDNITVIVVFLHPVCTVERIY 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 139141 143367 + Carg01298-RA Car06g00012 149748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00012 647 ProSiteProfiles PPM-type phosphatase domain profile. 380 637 IPR001932 -
Car06g00012 647 Pfam Protein phosphatase 2C 384 630 IPR001932 -
Car06g00012 647 Pfam Protein kinase domain 33 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g00012 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Car06g00012 647 ProSiteProfiles Protein kinase domain profile. 30 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00012 Car-Chr6:139141 Car15g00584 Car-Chr15:3224526 1.10E-44 dispersed
Car09g00309 Car-Chr9:1711430 Car06g00012 Car-Chr6:139141 1.46E-21 dispersed
Car06g00012 Car-Chr6:139141 Car09g00337 Car-Chr9:1867742 1.28E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88909 PF00069 Pkinase 1.00E-39 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00012 - - cmos:111440856 1252.27