Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car06g00014 | ATGGGTAGTAGAACAGTGAAGATTGGTGCAGACGATATAACCAATGCCGTGAACGGGATGCCTAGCTTCGTTTCTTCAATGCCCACACCCAATAATTCCATGGGTGCAGAGGGAAGCTCTATTCCGTCGTCTCGGATCTCAGACTTGAGAACACTTGAGCAAACTCTTGGATTTCACATAGAAGATGTAGACCTTTCTAGAAATCCTTTGTATAATCAGATAAAGGCAAATAGTTCAGCTCTGAACAACGTCCAGTTTGGTTCTTTAATTAAGCCACTTGTATCCACTGATGTAAATTTGCCAACTGCTATCATGGGGTCTCAAACGTTGCCATTACAGAAAGAATCAAATCCAAATTTGGTTTCTACATCTAGTGGTCCTCGTGAAAACTGGGGAGAGTCTAACGTGGCAGATACGAGCACAAGAACTGATTCCTCTACAGATGACGATGACAAAAGTCAAAGGCTTGACAAAGATCAAGGAAACTCACTTATGGCATATGATTCTAACAACAAGTTGAAGGAAAAAACAGCAGATCAGAAGACCTTACGAAGGCTTGCCCAAAATCGTGAAGCTGCTAGAAAAAGTCGTTTAAGGAAAAAGGCATATGTGCAGCAGCTAGAAAGTAGCAGGCTGAAGCTTACTCAGCTCGAGCAAGAACTTCAGCGAGCCCGTCAGCAGGGTATCTTTATTTCAAGTTCTGGAGACCAAGCTCATTCCATGAGTGGAAATGGTGCACTAGCATTTGATGTAGAATATTCACGTTGGTTAGAGGAGCATAATAGACTGATAAATGAGCTTAGAGCTGCAGTTAATTCACACGCGGGTGACACTGAACTGCGAACGGTTGTTGATAATGTGACTGCACAGTTCGATGATATTTTCAGGTTGAAAGGCATTGCAGCCAAAGCTGATGTGTTCCACATCTTGTCAGGAATGTGGAAGACACCAGCAGAGCGGTGTTTCCTGTGGATTGGTGGCTTCCGTTCATCTGAGATCCTAAAGCTTCTTGTAAGCCAATTGGAGCCTTTGACCGAGCAGCAAGTAGCAGAAATCTGCAACCTGCAACAATTATCACAACAGGCGGAAGATGCTCTCTCACAAGGAATGGATGCATTGCAGCAATCCTTGGCTGAAACATTGGCCAGTGGCACGCCTGCTACGTCGGGGTCATCTGGTAATGTGGCTAATTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTTGGAACTCTTGATGGCTTCCTACGCCAGGCCGATAATCTTCGTCAACAAACACTTCAACAAATGCATCGCATATTGACAACCCGTCAATCAGCTCGTGCGCTTCTTGCAATAAACGACTACTTCTCCCGCCTTCGAGCTCTAAGCTCTCTCTGGCTTGCACGGCCACGAGAGTGA | 1401 | 45.11 | MGSRTVKIGADDITNAVNGMPSFVSSMPTPNNSMGAEGSSIPSSRISDLRTLEQTLGFHIEDVDLSRNPLYNQIKANSSALNNVQFGSLIKPLVSTDVNLPTAIMGSQTLPLQKESNPNLVSTSSGPRENWGESNVADTSTRTDSSTDDDDKSQRLDKDQGNSLMAYDSNNKLKEKTADQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGALAFDVEYSRWLEEHNRLINELRAAVNSHAGDTELRTVVDNVTAQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKLLVSQLEPLTEQQVAEICNLQQLSQQAEDALSQGMDALQQSLAETLASGTPATSGSSGNVANYMGQMAMAMGKLGTLDGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE | 466 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 153793 | 157560 | - | Carg01296-RA | Car06g00014 | 149750 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car06g00014 | 466 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 179 | 223 | IPR004827 | GO:0003700|GO:0006355 | |
Car06g00014 | 466 | MobiDBLite | consensus disorder prediction | 109 | 182 | - | - | |
Car06g00014 | 466 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 70 | 466 | - | - | |
Car06g00014 | 466 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 184 | 199 | IPR004827 | GO:0003700|GO:0006355 | |
Car06g00014 | 466 | Pfam | bZIP transcription factor | 180 | 221 | IPR004827 | GO:0003700|GO:0006355 | |
Car06g00014 | 466 | ProSiteProfiles | DOG1 domain profile. | 246 | 463 | IPR025422 | GO:0006351|GO:0043565 | |
Car06g00014 | 466 | CDD | bZIP_HBP1b-like | 181 | 233 | - | - | |
Car06g00014 | 466 | Gene3D | - | 180 | 231 | - | - | |
Car06g00014 | 466 | SUPERFAMILY | Leucine zipper domain | 181 | 224 | IPR046347 | GO:0003700|GO:0006355 | |
Car06g00014 | 466 | Pfam | Seed dormancy control | 264 | 339 | IPR025422 | GO:0006351|GO:0043565 | |
Car06g00014 | 466 | MobiDBLite | consensus disorder prediction | 109 | 142 | - | - | |
Car06g00014 | 466 | PANTHER | TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 | 70 | 466 | - | - | |
Car06g00014 | 466 | MobiDBLite | consensus disorder prediction | 143 | 158 | - | - | |
Car06g00014 | 466 | Coils | Coil | 200 | 227 | - | - | |
Car06g00014 | 466 | SMART | brlzneu | 177 | 240 | IPR004827 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car06g00014 | Car-Chr6:153793 | Car14g00465 | Car-Chr14:2438490 | 0 | dispersed | |
Car20g00148 | Car-Chr20:809734 | Car06g00014 | Car-Chr6:153793 | 9.03E-104 | dispersed | |
Car06g00014 | Car-Chr6:153793 | Car04g01398 | Car-Chr4:8104388 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
3620 | PF14144 | DOG1 | 8.20E-30 | No_clan | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car06g00014 | K14431 | - | csv:101219149 | 806.979 |