Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00014 ATGGGTAGTAGAACAGTGAAGATTGGTGCAGACGATATAACCAATGCCGTGAACGGGATGCCTAGCTTCGTTTCTTCAATGCCCACACCCAATAATTCCATGGGTGCAGAGGGAAGCTCTATTCCGTCGTCTCGGATCTCAGACTTGAGAACACTTGAGCAAACTCTTGGATTTCACATAGAAGATGTAGACCTTTCTAGAAATCCTTTGTATAATCAGATAAAGGCAAATAGTTCAGCTCTGAACAACGTCCAGTTTGGTTCTTTAATTAAGCCACTTGTATCCACTGATGTAAATTTGCCAACTGCTATCATGGGGTCTCAAACGTTGCCATTACAGAAAGAATCAAATCCAAATTTGGTTTCTACATCTAGTGGTCCTCGTGAAAACTGGGGAGAGTCTAACGTGGCAGATACGAGCACAAGAACTGATTCCTCTACAGATGACGATGACAAAAGTCAAAGGCTTGACAAAGATCAAGGAAACTCACTTATGGCATATGATTCTAACAACAAGTTGAAGGAAAAAACAGCAGATCAGAAGACCTTACGAAGGCTTGCCCAAAATCGTGAAGCTGCTAGAAAAAGTCGTTTAAGGAAAAAGGCATATGTGCAGCAGCTAGAAAGTAGCAGGCTGAAGCTTACTCAGCTCGAGCAAGAACTTCAGCGAGCCCGTCAGCAGGGTATCTTTATTTCAAGTTCTGGAGACCAAGCTCATTCCATGAGTGGAAATGGTGCACTAGCATTTGATGTAGAATATTCACGTTGGTTAGAGGAGCATAATAGACTGATAAATGAGCTTAGAGCTGCAGTTAATTCACACGCGGGTGACACTGAACTGCGAACGGTTGTTGATAATGTGACTGCACAGTTCGATGATATTTTCAGGTTGAAAGGCATTGCAGCCAAAGCTGATGTGTTCCACATCTTGTCAGGAATGTGGAAGACACCAGCAGAGCGGTGTTTCCTGTGGATTGGTGGCTTCCGTTCATCTGAGATCCTAAAGCTTCTTGTAAGCCAATTGGAGCCTTTGACCGAGCAGCAAGTAGCAGAAATCTGCAACCTGCAACAATTATCACAACAGGCGGAAGATGCTCTCTCACAAGGAATGGATGCATTGCAGCAATCCTTGGCTGAAACATTGGCCAGTGGCACGCCTGCTACGTCGGGGTCATCTGGTAATGTGGCTAATTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTTGGAACTCTTGATGGCTTCCTACGCCAGGCCGATAATCTTCGTCAACAAACACTTCAACAAATGCATCGCATATTGACAACCCGTCAATCAGCTCGTGCGCTTCTTGCAATAAACGACTACTTCTCCCGCCTTCGAGCTCTAAGCTCTCTCTGGCTTGCACGGCCACGAGAGTGA 1401 45.11 MGSRTVKIGADDITNAVNGMPSFVSSMPTPNNSMGAEGSSIPSSRISDLRTLEQTLGFHIEDVDLSRNPLYNQIKANSSALNNVQFGSLIKPLVSTDVNLPTAIMGSQTLPLQKESNPNLVSTSSGPRENWGESNVADTSTRTDSSTDDDDKSQRLDKDQGNSLMAYDSNNKLKEKTADQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGALAFDVEYSRWLEEHNRLINELRAAVNSHAGDTELRTVVDNVTAQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKLLVSQLEPLTEQQVAEICNLQQLSQQAEDALSQGMDALQQSLAETLASGTPATSGSSGNVANYMGQMAMAMGKLGTLDGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 153793 157560 - Carg01296-RA Car06g00014 149750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00014 466 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 179 223 IPR004827 GO:0003700|GO:0006355
Car06g00014 466 MobiDBLite consensus disorder prediction 109 182 - -
Car06g00014 466 PANTHER TRANSCRIPTION FACTOR TGA9 70 466 - -
Car06g00014 466 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 184 199 IPR004827 GO:0003700|GO:0006355
Car06g00014 466 Pfam bZIP transcription factor 180 221 IPR004827 GO:0003700|GO:0006355
Car06g00014 466 ProSiteProfiles DOG1 domain profile. 246 463 IPR025422 GO:0006351|GO:0043565
Car06g00014 466 CDD bZIP_HBP1b-like 181 233 - -
Car06g00014 466 Gene3D - 180 231 - -
Car06g00014 466 SUPERFAMILY Leucine zipper domain 181 224 IPR046347 GO:0003700|GO:0006355
Car06g00014 466 Pfam Seed dormancy control 264 339 IPR025422 GO:0006351|GO:0043565
Car06g00014 466 MobiDBLite consensus disorder prediction 109 142 - -
Car06g00014 466 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 70 466 - -
Car06g00014 466 MobiDBLite consensus disorder prediction 143 158 - -
Car06g00014 466 Coils Coil 200 227 - -
Car06g00014 466 SMART brlzneu 177 240 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00014 Car-Chr6:153793 Car14g00465 Car-Chr14:2438490 0 dispersed
Car20g00148 Car-Chr20:809734 Car06g00014 Car-Chr6:153793 9.03E-104 dispersed
Car06g00014 Car-Chr6:153793 Car04g01398 Car-Chr4:8104388 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3620 PF14144 DOG1 8.20E-30 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00014 K14431 - csv:101219149 806.979