Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00019 ATGAGGGAAGATGATTCTAATTGGTTTTCAAAACGGGATCAGGAGCTTCCCTCTCCTGATGAATTGATGCCTCTTTCCCAAACCCTTATCACCCCTGATCTTGCTTTGGCATTTGATATCAGAAACCCAGATAGTTCCATCAACAACAACAACCACCACCACCCACCGCCTCCGCCGCCTCCGGTGCCAATCCAGCCGAGTTCGGCCGATTTTGGGGATTCTGGTGATTTTGTGTCTGGCGCCGGCGCTGGAGACGAACCTGCGAGGACCCTGAAGAGGCCGCGCCTCGTCTGGACTCCACAGCTCCACAAGCGATTTGTCGACGCGGTCGGCCATTTGGGAATAAAAAATGCTGTACCTAAAACCATAATGCAGTTGATGAGCGTGGATGGGTTAACTCGTGAGAACGTGGCTAGCCATTTGCAGAAATATCGCCTCTATTTGAAGCGTATGCAGGGGATTTCCGGCGGCAGTGGCGGCGGAGTTAGTGGCGGTGCTGGATTAGTTTCACCCGTTTCAGATCCTGCTACCGACCATTTGTTCGCCAGCTCTCCAGTTCCACCGCATTTTCTTCACTCCTCTCGGGCTAATTCCGACCATTTCCTGCCGTTTGTGCCCGTCGGCGCTCTGCAGCACCACCACCAGATGGCCGCCGCCGCTGCCGCTCAATACCACCGACAAGTAGCCCATTTTGGGTCGCCGCCTAATGGGCAGTTTGAGCATCCATTCTTAGCTCGGCCTGTTCACCGGATTGGGACCCCTGTGACTACCCCGGCGACGAATTACAGCGAGGATTTGGATTCGAGTAATGGAACAGGAGGGAGGAAGGTTCTCACTCTTTTCCCCACCGGAAACGATTAA 861 54.12 MREDDSNWFSKRDQELPSPDELMPLSQTLITPDLALAFDIRNPDSSINNNNHHHPPPPPPPVPIQPSSADFGDSGDFVSGAGAGDEPARTLKRPRLVWTPQLHKRFVDAVGHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGVSGGAGLVSPVSDPATDHLFASSPVPPHFLHSSRANSDHFLPFVPVGALQHHHQMAAAAAAQYHRQVAHFGSPPNGQFEHPFLARPVHRIGTPVTTPATNYSEDLDSSNGTGGRKVLTLFPTGND 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 195641 196501 + Carg01291-RA Car06g00019 149755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00019 286 MobiDBLite consensus disorder prediction 40 88 - -
Car06g00019 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 98 149 IPR017930 -
Car06g00019 286 Pfam Myb-like DNA-binding domain 97 145 IPR001005 -
Car06g00019 286 MobiDBLite consensus disorder prediction 254 286 - -
Car06g00019 286 MobiDBLite consensus disorder prediction 1 27 - -
Car06g00019 286 MobiDBLite consensus disorder prediction 1 18 - -
Car06g00019 286 MobiDBLite consensus disorder prediction 52 66 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00019 Car-Chr6:195641 Car13g00081 Car-Chr13:593304 3.32E-37 dispersed
Car07g01077 Car-Chr7:6393751 Car06g00019 Car-Chr6:195641 1.19E-119 transposed
Car14g00453 Car-Chr14:2385588 Car06g00019 Car-Chr6:195641 2.03E-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3621 PF00249 Myb_DNA-binding 1.60E-07 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00019 - - csv:101216059 433.721