Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00019 ATGAGGGAAGATGATTCTAATTGGTTTTCAAAACGGGATCAGGAGCTTCCCTCTCCTGATGAATTGATGCCTCTTTCCCAAACCCTTATCACCCCTGATCTTGCTTTGGCATTTGATATCAGAAACCCAGATAGTTCCATCAACAACAACAACCACCACCACCCACCGCCTCCGCCGCCTCCGGTGCCAATCCAGCCGAGTTCGGCCGATTTTGGGGATTCTGGTGATTTTGTGTCTGGCGCCGGCGCTGGAGACGAACCTGCGAGGACCCTGAAGAGGCCGCGCCTCGTCTGGACTCCACAGCTCCACAAGCGATTTGTCGACGCGGTCGGCCATTTGGGAATAAAAAATGCTGTACCTAAAACCATAATGCAGTTGATGAGCGTGGATGGGTTAACTCGTGAGAACGTGGCTAGCCATTTGCAGAAATATCGCCTCTATTTGAAGCGTATGCAGGGGATTTCCGGCGGCAGTGGCGGCGGAGTTAGTGGCGGTGCTGGATTAGTTTCACCCGTTTCAGATCCTGCTACCGACCATTTGTTCGCCAGCTCTCCAGTTCCACCGCATTTTCTTCACTCCTCTCGGGCTAATTCCGACCATTTCCTGCCGTTTGTGCCCGTCGGCGCTCTGCAGCACCACCACCAGATGGCCGCCGCCGCTGCCGCTCAATACCACCGACAAGTAGCCCATTTTGGGTCGCCGCCTAATGGGCAGTTTGAGCATCCATTCTTAGCTCGGCCTGTTCACCGGATTGGGACCCCTGTGACTACCCCGGCGACGAATTACAGCGAGGATTTGGATTCGAGTAATGGAACAGGAGGGAGGAAGGTTCTCACTCTTTTCCCCACCGGAAACGATTAA 861 54.12 MREDDSNWFSKRDQELPSPDELMPLSQTLITPDLALAFDIRNPDSSINNNNHHHPPPPPPPVPIQPSSADFGDSGDFVSGAGAGDEPARTLKRPRLVWTPQLHKRFVDAVGHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGVSGGAGLVSPVSDPATDHLFASSPVPPHFLHSSRANSDHFLPFVPVGALQHHHQMAAAAAAQYHRQVAHFGSPPNGQFEHPFLARPVHRIGTPVTTPATNYSEDLDSSNGTGGRKVLTLFPTGND 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 195641 196501 + Carg01291-RA Car06g00019 149755

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00019 286 MobiDBLite consensus disorder prediction 40 88 - -
Car06g00019 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 98 149 IPR017930 -
Car06g00019 286 Pfam Myb-like DNA-binding domain 97 145 IPR001005 -
Car06g00019 286 MobiDBLite consensus disorder prediction 254 286 - -
Car06g00019 286 MobiDBLite consensus disorder prediction 1 27 - -
Car06g00019 286 MobiDBLite consensus disorder prediction 1 18 - -
Car06g00019 286 MobiDBLite consensus disorder prediction 52 66 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00019 - - - csv:101216059 433.721
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00019 Car-Chr6:195641 Car13g00081 Car-Chr13:593304 3.32E-37 dispersed
Car07g01077 Car-Chr7:6393751 Car06g00019 Car-Chr6:195641 1.19E-119 transposed
Car14g00453 Car-Chr14:2385588 Car06g00019 Car-Chr6:195641 2.03E-131 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car14g01696 CST 12 271 G2-like Transcription Factor Family AT3G24120 60.1 1.2e-73 273.9
Car10g01051 . 16 203 G2-like Transcription Factor Family AT3G24120 53.0 9.5e-42 167.9
Car19g00887 . 18 178 G2-like Transcription Factor Family AT3G24120 58.5 8.1e-41 164.9
Car06g01068 CST 12 101 G2-like Transcription Factor Family AT3G24120 87.0 1.1e-40 164.5
Car19g00157 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 1.1e-37 154.5
Car07g00322 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.4e-37 153.3
Car20g00562 . 92 236 G2-like Transcription Factor Family AT5G44190 66.2 6.8e-47 185.3
Car01g00304 . 189 413 G2-like Transcription Factor Family AT5G16560 50.4 2.3e-43 173.7
Car19g00172 . 150 352 G2-like Transcription Factor Family AT5G16560 52.2 2.6e-42 170.2
Car12g00477 CCT 4 143 G2-like Transcription Factor Family AT5G42630 58.3 8.2e-38 154.5
Car04g02002 . 40 278 G2-like Transcription Factor Family AT1G25550 52.0 6.6e-45 178.3
Car04g02002 . 40 278 G2-like Transcription Factor Family AT3G25790 51.6 1.5e-38 157.1
Car03g00998 . 1 305 G2-like Transcription Factor Family AT5G05090 54.1 3.8e-74 275.4
Car07g01077 . 1 299 G2-like Transcription Factor Family AT5G05090 54.5 1.2e-72 270.4
Car14g00453 . 1 279 G2-like Transcription Factor Family AT5G05090 58.2 1.1e-70 263.8
Car06g00019 . 1 286 G2-like Transcription Factor Family AT5G05090 52.3 2.4e-68 256.1
Car14g01696 CST 12 315 G2-like Transcription Factor Family AT4G13640 57.3 2.4e-61 233.0
Car14g01696 CST 12 271 G2-like Transcription Factor Family AT3G24120 60.1 1.2e-73 273.9
Car10g01051 . 16 203 G2-like Transcription Factor Family AT3G24120 53.0 9.5e-42 167.9
Car19g00887 . 18 178 G2-like Transcription Factor Family AT3G24120 58.5 8.1e-41 164.9
Car06g01068 CST 12 101 G2-like Transcription Factor Family AT3G24120 87.0 1.1e-40 164.5
Car19g00157 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 1.1e-37 154.5
Car07g00322 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.4e-37 153.3
Car06g01472 . 47 278 G2-like Transcription Factor Family AT1G69580 50.4 2.7e-40 163.3
Car19g00887 . 1 387 G2-like Transcription Factor Family AT1G79430 51.7 3.0e-82 302.8
Car10g01051 . 1 352 G2-like Transcription Factor Family AT1G79430 54.6 2.1e-80 296.6
Car02g00488 . 1 209 G2-like Transcription Factor Family AT1G79430 63.0 1.5e-54 210.7
Car07g00323 . 66 274 G2-like Transcription Factor Family AT2G01060 66.7 8.6e-54 207.6
Car07g01077 . 1 299 G2-like Transcription Factor Family AT3G10760 62.5 2.4e-89 326.2
Car03g00998 . 1 305 G2-like Transcription Factor Family AT3G10760 60.1 1.7e-87 320.1
Car06g00019 . 1 286 G2-like Transcription Factor Family AT3G10760 58.1 3.9e-84 308.9
Car14g00453 . 1 279 G2-like Transcription Factor Family AT3G10760 58.6 7.6e-80 294.7
Car07g01077 . 1 204 G2-like Transcription Factor Family AT2G40970 62.0 6.5e-60 228.0
Car14g00453 . 1 195 G2-like Transcription Factor Family AT2G40970 59.9 4.2e-59 225.3
Car03g00998 . 1 204 G2-like Transcription Factor Family AT2G40970 59.0 5.5e-59 224.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001839 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3621 PF00249 Myb_DNA-binding 1.60E-07 CL0123 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00019 Car_Chr06 FPKM 26.50234 30.358286 16.504719 14.184398 13.143873 16.068592 13.149127 16.597557 16.2414 15.243185