Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00039 ATGGAGATCTTACAGGCTCTCGATGCTCAGGTTCTCGTTGGCTTAGCCGCCGCCCTGGTTGCCATTGTTGCTGGTGCCTTTTTCCTTGTCTCCTCCAGAAAACCAGCATCCACAGCCTGCTTGGATCCTGAGAACTTTAAGGAGTTTAAGCTTGTTAAGCGCACGAAGCTGAGCCATAATGTGGCAAAGTTCACTTTTATACTTCCCAAGACCGATTCAATTCTTGGTCTTCCTATTGGACAGCATCTAAGTTGCAGGGGAAAGGATAGCCAAGGTGAAGAGGTTATTAAATCTTACACTCCAGTTACCTTGGACTCTGATGTTGGATATTTTGAGCTAGTCATAAAGATGTATCCCCAAGGAAGGATGTCGCATCATTTTCGAGAAATGCGTATGGGGGACTTTCTTGCTGTGAAGGGACCAAAGGGAAGTTTTAAGTATCAACCTGGTAAAGTTAGAGCATTTGGGATGCTCGCTGGAGGCTCTGGCATTACACCCATGTATCAAGTTGCTCGGTCTATATTAGAAAACCTGAACGACAAGACACAGATTCACCTTATTTATGCCAATGTTACACTTGAAGATATTCTTTTGAAGGAGGAATTGGATCTTCTTGCCAAGAGATACCCTGATCGCTTCCAGATCTACTATGTCTTGAACCAGCCTCCTAAAGTTTGGGATGGCGGCGTCGGGTTTGTGTCGAAGGAAATGATTCGAGCGCATTGCCCTGCACCTGCCTCTGACATTCAGATTTTGCGGTGTGGACCGCCGCCGATGAACAAGGCCATGGCTGCCCACCTTGATGCTCTTGGATATACACCTGAAATGCAGTTCCAGTTCTAG 843 46.38 MEILQALDAQVLVGLAAALVAIVAGAFFLVSSRKPASTACLDPENFKEFKLVKRTKLSHNVAKFTFILPKTDSILGLPIGQHLSCRGKDSQGEEVIKSYTPVTLDSDVGYFELVIKMYPQGRMSHHFREMRMGDFLAVKGPKGSFKYQPGKVRAFGMLAGGSGITPMYQVARSILENLNDKTQIHLIYANVTLEDILLKEELDLLAKRYPDRFQIYYVLNQPPKVWDGGVGFVSKEMIRAHCPAPASDIQILRCGPPPMNKAMAAHLDALGYTPEMQFQF 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 295623 299231 + Carg01271-RA Car06g00039 149775

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00039 280 Pfam Oxidoreductase NAD-binding domain 157 263 IPR001433 GO:0016491
Car06g00039 280 Pfam Oxidoreductase FAD-binding domain 49 147 IPR008333 -
Car06g00039 280 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 44 148 IPR017927 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00039 K00326 CYB5R; cytochrome-b5 reductase [EC:1.6.2.2] - csv:101212931 476.863
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car03g00161 Car06g00039 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00161 Car-Chr3:2905433 Car06g00039 Car-Chr6:295623 9.74E-167 dispersed
Car06g00039 Car-Chr6:295623 Car20g00007 Car-Chr20:34752 1.17E-124 dispersed
Car06g00039 Car-Chr6:295623 Car07g01094 Car-Chr7:6507820 3.56E-174 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g84 . . . . Bpe04g01356 Bpe03g01064 Bma04g01430 Bma10g00255 . . Cma03g00173 Cma07g01119 Car03g00161 . Sed03g2083 Cpe10g01086 . Bhi03g02557 Tan03g0549 Cmetu08g0889 . Hepe04g0560 . . . . . . . . . . . . . Lsi01g01736 Csa04g01830 Chy08g00202 Cme04g02153 Blo07g01200 . Bda03g01493 Bda05g00993 . . . . . Cmo03g00203 Cmo07g01169 . . Car06g00039 . . . . . . . . . . Cla10g01589 Cam10g1638 Cec10g1687 Cco10g1651 Clacu10g1653 Cmu10g2408 Cre10g1789 Lsi03g01657 Csa03g03663 Chy04g01700 Cme08g01481
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car02g00943 CST 1 134 NADPH P450 reductases AT5G53560 77.6 1.9e-58 222.2
Car15g00942 CST 1 134 NADPH P450 reductases AT5G53560 76.1 1.1e-56 216.5
Car14g01692 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.6e-52 202.6
Car06g01070 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.3e-51 199.5
Car17g00096 . 1 133 NADPH P450 reductases AT5G53560 63.2 7.6e-47 183.7
Car02g01436 . 6 131 NADPH P450 reductases AT5G53560 63.5 4.6e-44 174.5
Car19g00129 . 42 169 NADPH P450 reductases AT5G53560 63.3 1.0e-43 173.3
Car06g01070 . 1 132 NADPH P450 reductases AT5G48810 64.9 9.4e-48 186.8
Car14g01692 . 1 132 NADPH P450 reductases AT5G48810 64.9 9.4e-48 186.8
Car17g00096 . 1 133 NADPH P450 reductases AT5G48810 63.0 1.0e-46 183.3
Car19g00129 . 40 170 NADPH P450 reductases AT5G48810 62.4 5.7e-45 177.6
Car02g01436 . 6 132 NADPH P450 reductases AT5G48810 62.0 3.7e-44 174.9
Car02g00943 CST 1 134 NADPH P450 reductases AT5G48810 58.1 1.4e-43 172.9
Car15g00942 CST 1 134 NADPH P450 reductases AT5G48810 57.4 1.8e-43 172.6
Car14g01692 . 22 133 NADPH P450 reductases AT2G32720 84.8 8.7e-51 196.8
Car06g01070 . 22 133 NADPH P450 reductases AT2G32720 83.0 4.3e-50 194.5
Car17g00096 . 22 133 NADPH P450 reductases AT2G32720 76.8 8.4e-46 180.3
Car02g01436 . 21 132 NADPH P450 reductases AT2G32720 70.5 2.8e-41 165.2
Car19g00129 . 59 170 NADPH P450 reductases AT2G32720 70.5 1.8e-40 162.5
Car02g00943 CST 22 133 NADPH P450 reductases AT2G32720 66.1 5.3e-40 161.0
Car15g00942 CST 22 133 NADPH P450 reductases AT2G32720 64.3 4.5e-39 157.9
Car07g01094 . 2 281 NADPH P450 reductases AT5G17770 81.1 2.5e-132 468.8
Car03g00161 CCT 2 281 NADPH P450 reductases AT5G17770 80.7 6.1e-131 464.2
Car06g00039 CCT 2 280 NADPH P450 reductases AT5G17770 77.5 1.1e-124 443.4
Car20g00007 . 1 253 NADPH P450 reductases AT5G17770 68.5 5.0e-101 364.8
Car02g00943 CST 1 134 NADPH P450 reductases AT5G53560 77.6 1.9e-58 222.2
Car15g00942 CST 1 134 NADPH P450 reductases AT5G53560 76.1 1.1e-56 216.5
Car14g01692 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.6e-52 202.6
Car06g01070 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.3e-51 199.5
Car17g00096 . 1 133 NADPH P450 reductases AT5G53560 63.2 7.6e-47 183.7
Car02g01436 . 6 131 NADPH P450 reductases AT5G53560 63.5 4.6e-44 174.5
Car19g00129 . 42 169 NADPH P450 reductases AT5G53560 63.3 1.0e-43 173.3
Car06g01070 . 1 132 NADPH P450 reductases AT5G48810 64.9 9.4e-48 186.8
Car14g01692 . 1 132 NADPH P450 reductases AT5G48810 64.9 9.4e-48 186.8
Car17g00096 . 1 133 NADPH P450 reductases AT5G48810 63.0 1.0e-46 183.3
Car19g00129 . 40 170 NADPH P450 reductases AT5G48810 62.4 5.7e-45 177.6
Car02g01436 . 6 132 NADPH P450 reductases AT5G48810 62.0 3.7e-44 174.9
Car02g00943 CST 1 134 NADPH P450 reductases AT5G48810 58.1 1.4e-43 172.9
Car15g00942 CST 1 134 NADPH P450 reductases AT5G48810 57.4 1.8e-43 172.6
Car14g01692 . 22 133 NADPH P450 reductases AT2G32720 84.8 8.7e-51 196.8
Car06g01070 . 22 133 NADPH P450 reductases AT2G32720 83.0 4.3e-50 194.5
Car17g00096 . 22 133 NADPH P450 reductases AT2G32720 76.8 8.4e-46 180.3
Car02g01436 . 21 132 NADPH P450 reductases AT2G32720 70.5 2.8e-41 165.2
Car19g00129 . 59 170 NADPH P450 reductases AT2G32720 70.5 1.8e-40 162.5
Car02g00943 CST 22 133 NADPH P450 reductases AT2G32720 66.1 5.3e-40 161.0
Car15g00942 CST 22 133 NADPH P450 reductases AT2G32720 64.3 4.5e-39 157.9
Car07g01094 . 2 281 NADPH P450 reductases AT5G17770 81.1 2.5e-132 468.8
Car03g00161 CCT 2 281 NADPH P450 reductases AT5G17770 80.7 6.1e-131 464.2
Car06g00039 CCT 2 280 NADPH P450 reductases AT5G17770 77.5 1.1e-124 443.4
Car20g00007 . 1 253 NADPH P450 reductases AT5G17770 68.5 5.0e-101 364.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00039 Car_Chr06 FPKM 13.971212 13.862145 18.806854 19.619406 5.692303 5.97623 5.420754 31.137501 31.441608 29.296358