Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00058 ATGGAAAATCACGGCGATGACCCAAACAGTCCAAATCTCCGCTCCGACAGGGCGGAGCCGGTGAGATCACGGTGGACGCCGAAGCCGGAGCAGATTCTGATTTTGGAGTCCATTTTCAACAGTGGAATGGTTAATCCACCCAAGGATGAGACCGTTAGAATTAGAAAGCTGCTTGAGAAATTTGGCTCTGTCGGAGATGCCAATGTTTTCTACTGGTTTCAAAACCGCCGCTCTCGGTCTCGCCGCCGCCAACGCCAGCTGCAGGCAGCTGCAAGCCACCAAGGTGGCAGTGCAATTCATTATGACAGTGGTTGTAGCGGTGGCAGTGTCATGAATTTTGCTCCTTCCTCTTCTTACCTTGGAGAAGGAGGCTCCTCCTCCTCCTCCTCTTCCGCCTCCGCCTCCGGCGGCGGCGGCGGTTTTTCGATGACCGATCACATGGGTATCTCTGAAATTGATCAGCCGATGGTTGTAACCCCCTCGTTTTGCCCTTCAGCAACCTCGAATTTAGAGTTCCAATCAGGTTATATTATAATATTCATAAATGGAGTTCCGACAGAAGTGCCAAAAGGAGCGGTGGACATGAAGGCTATGTTTGGGGATGACACAGTGTTGGTTCACTCCTCAGGACTCCCAGTTCTTACCAATGAATTTGGAATATCACTGCACAGTTTGCAGCATGGTGAAACCTACTTTCTGGTAATTATTCTCTCTCTTTCTCTGTTTTTGAGCCTCTTAAACTTTCTATCTTCCTTCTATAATTCAAACAAACACATAATCTAA 783 48.28 MENHGDDPNSPNLRSDRAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQLQAAASHQGGSAIHYDSGCSGGSVMNFAPSSSYLGEGGSSSSSSSASASGGGGGFSMTDHMGISEIDQPMVVTPSFCPSATSNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLTNEFGISLHSLQHGETYFLVIILSLSLFLSLLNFLSSFYNSNKHII 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 380691 381796 - Carg01252-RA Car06g00058 149794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00058 260 MobiDBLite consensus disorder prediction 1 24 - -
Car06g00058 260 Pfam Homeodomain 22 82 IPR001356 GO:0003677
Car06g00058 260 MobiDBLite consensus disorder prediction 1 25 - -
Car06g00058 260 ProSiteProfiles 'Homeobox' domain profile. 18 83 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00058 Car-Chr6:380691 Car07g00176 Car-Chr7:1016031 2.48E-17 dispersed
Car14g00419 Car-Chr14:2139594 Car06g00058 Car-Chr6:380691 8.16E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3626 PF00046 Homeodomain 6.80E-13 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00058 - - cmos:111450454 400.593