Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00061 ATGGGCTCAGTCATGAATAACTTGACTGTCGAAACAGATGATGCCTTTTCCAGTTTGCTCGAGCTTGCTGCAAATGATGACATTGATGCCTTTAAGAGATCGATTGAGCGCGACCCTTCTGGTATTGATGAGATTGGTTTGTGGTATGGTCGATTGAGAGGCTCAAAACAGATGGCTAATGAGCAGAGAACACCTTTAATGGTTGCTGCTACTTATGGAAGCATTGAGGTTCTGAAGCTTATTCTTTCTCTTTCTTGTGCTGATGTAAACCGCGCCGTTGGTCTTGACCGAAGCACTGCCCTTCATTGTGCAGCCTCAGGTGGGGCTGCAAATGCTGTAGAGATTGTGAAGCTGCTCTTAGCTGCTGGTGCTGATTCTAGTATGGTTGATGGGAATGGACATCGACCAGTTGATGTGATTGTTGCCCCCCCAAGGCATGCAGAGTTTAAATCAATCCTTACAGAGCTTCTTAGAACATATGGTTTGTCTGGTGAAGGACATCTTGATGTTTTAAAAGGTGCAAGGAATTTGCTTTCTCCTCGCCCTTCATCTCCTCCGAATGCCCCCTCATCTGCATCAGAGTTGGTTTCTTCTCCAACAAAGTCGAAACTAAATGATTTTCCTATGTTTTCTCCATCTGAAAAGAAAGAATACCCTGTTGATATTTCTCTTCCGGACATCAAGAACAGTATCTACTCAACTGATGAATTTCGAATGTATTCGTTCAAGGTTCGACCCTGCTCACGGGCCTACTCTCATGATTGGACTGAGTGCCCCTTTGTCCACCCTGGAGAGAATGCCAGGAGGAGGGATCCAAGAAAGTTTCATTATAGCTGTGTACCCTGTCCCGATTTTCGGAAGGGTGCTTGCAGATGGGGAGATATGTGTGAATATGCTCACGGGGTGTTTGAGTGCTGGCTGCACCCAGCACAATATCGGACCCGACTTTGCAAAGATGGCACAAATTGCTCAAGGAGAGTCTGCTTCTTTGCACACAGGACTGAGGAACTGCGACCGCTGTATGTTTCGACTGGCTCTGCAACTTCTGGGGCTTCTGCTATGGAATATAATACAGTCATGAACCTTCTACCTGGTTCTCCATCTTCAGTCCCTATGATGTCTCCATCACCGTTCACTCCTCCTATGTCTCCCTCTGCGAATGGCATGTCTCACTCATCCATGGCGTGGTCTCAACCAAATGTACCTGTCTTGCATCTTCCAGGAAGCAATATTCAATCCAGCCGCCTAAGATCTTCTTTGAGTGCAAGAGACATCCCTGCGGAGGACTTCGATTATCTGAGCGATTTTGATATGCAACAACAGCAGCTCGTTAATGACTTGAACTGTCTTTCTCAGCCACCATTAAGTTCAAACTCATTGAGCCGTTCTGGTCGGCTGAAGACTCTGACTCCTTCGAATCTTGACGATCTCTTCTCTGCTGAGAGTTTATCTCCCAGATACTCCGATCAAGCTTTGGCTTCAGCTGTTTTCTCCCCTACACACAAATCAGCTGTTATCAATCAATTTCAGCAGCAACAAAATATTTTGTCACCAATCAATACAAATTTCTCTCCTAAAAATGTTGACCACCCTCTATTGCAGGCTTCCTTTGGGGTTCCATCATCTGGGAGGATGTCTCCACGAAATCTGGAACCGATCTCTCCCATGGGCTCTCGCTTGTCCATGTTAGCTCATAGAGAGAAACAGCCACCGTTTGGCAGCCTCAGCTCACGTGAACTAGGTGCCAATTCTGCTTCTGCTGTTGGTTCCCCTACAAGTTCTTGGTCTAAATGGGGACCTTCTAATAGAAGACCTGATTGGGCAGTCAATGCAGATGAAATGGGTAAACTTAAGCAATCATCGTCCTTTGAGCTTGGGAACAATGGAGAAGAACCAGATTTATCATGGGTTCAATCGCTTGTAAAAGAATCTCCAACTGAGATAAAAGAAAAGCAGGCTTATCCCAACTCAGGTGGCAATAATTTTGTATCTGAAGGTGAGAGTTCTAACATGAACTCCCAAATGGAGTCAGTTGACCATGCTGCATTGGGAGCATGGCTCGAGCAAATGCAGCTCGATCATCTCGTCGCACAACAAAACTGA 2103 45.84 MGSVMNNLTVETDDAFSSLLELAANDDIDAFKRSIERDPSGIDEIGLWYGRLRGSKQMANEQRTPLMVAATYGSIEVLKLILSLSCADVNRAVGLDRSTALHCAASGGAANAVEIVKLLLAAGADSSMVDGNGHRPVDVIVAPPRHAEFKSILTELLRTYGLSGEGHLDVLKGARNLLSPRPSSPPNAPSSASELVSSPTKSKLNDFPMFSPSEKKEYPVDISLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRWGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHRTEELRPLYVSTGSATSGASAMEYNTVMNLLPGSPSSVPMMSPSPFTPPMSPSANGMSHSSMAWSQPNVPVLHLPGSNIQSSRLRSSLSARDIPAEDFDYLSDFDMQQQQLVNDLNCLSQPPLSSNSLSRSGRLKTLTPSNLDDLFSAESLSPRYSDQALASAVFSPTHKSAVINQFQQQQNILSPINTNFSPKNVDHPLLQASFGVPSSGRMSPRNLEPISPMGSRLSMLAHREKQPPFGSLSSRELGANSASAVGSPTSSWSKWGPSNRRPDWAVNADEMGKLKQSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKQAYPNSGGNNFVSEGESSNMNSQMESVDHAALGAWLEQMQLDHLVAQQN 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 399944 402046 + Carg01249-RA Car06g00061 149797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00061 700 Pfam CCCH-type zinc finger 281 301 IPR041367 -
Car06g00061 700 MobiDBLite consensus disorder prediction 576 600 - -
Car06g00061 700 MobiDBLite consensus disorder prediction 188 207 - -
Car06g00061 700 Pfam Ankyrin repeats (3 copies) 61 127 IPR002110 GO:0005515
Car06g00061 700 ProSiteProfiles Zinc finger C3H1-type profile. 281 303 IPR000571 GO:0046872
Car06g00061 700 ProSiteProfiles Ankyrin repeat profile. 96 131 IPR002110 GO:0005515
Car06g00061 700 ProSiteProfiles Ankyrin repeat region circular profile. 96 130 - -
Car06g00061 700 MobiDBLite consensus disorder prediction 567 607 - -
Car06g00061 700 MobiDBLite consensus disorder prediction 650 676 - -
Car06g00061 700 MobiDBLite consensus disorder prediction 176 210 - -
Car06g00061 700 MobiDBLite consensus disorder prediction 647 676 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g00061 Car14g00415 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00061 Car-Chr6:399944 Car14g00909 Car-Chr14:5436453 0 dispersed
Car14g00415 Car-Chr14:2109824 Car06g00061 Car-Chr6:399944 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3627 PF12796 Ank_2 8.30E-09 CL0465 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00061 - - csv:101207646 1180.62