Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car06g00061 | ATGGGCTCAGTCATGAATAACTTGACTGTCGAAACAGATGATGCCTTTTCCAGTTTGCTCGAGCTTGCTGCAAATGATGACATTGATGCCTTTAAGAGATCGATTGAGCGCGACCCTTCTGGTATTGATGAGATTGGTTTGTGGTATGGTCGATTGAGAGGCTCAAAACAGATGGCTAATGAGCAGAGAACACCTTTAATGGTTGCTGCTACTTATGGAAGCATTGAGGTTCTGAAGCTTATTCTTTCTCTTTCTTGTGCTGATGTAAACCGCGCCGTTGGTCTTGACCGAAGCACTGCCCTTCATTGTGCAGCCTCAGGTGGGGCTGCAAATGCTGTAGAGATTGTGAAGCTGCTCTTAGCTGCTGGTGCTGATTCTAGTATGGTTGATGGGAATGGACATCGACCAGTTGATGTGATTGTTGCCCCCCCAAGGCATGCAGAGTTTAAATCAATCCTTACAGAGCTTCTTAGAACATATGGTTTGTCTGGTGAAGGACATCTTGATGTTTTAAAAGGTGCAAGGAATTTGCTTTCTCCTCGCCCTTCATCTCCTCCGAATGCCCCCTCATCTGCATCAGAGTTGGTTTCTTCTCCAACAAAGTCGAAACTAAATGATTTTCCTATGTTTTCTCCATCTGAAAAGAAAGAATACCCTGTTGATATTTCTCTTCCGGACATCAAGAACAGTATCTACTCAACTGATGAATTTCGAATGTATTCGTTCAAGGTTCGACCCTGCTCACGGGCCTACTCTCATGATTGGACTGAGTGCCCCTTTGTCCACCCTGGAGAGAATGCCAGGAGGAGGGATCCAAGAAAGTTTCATTATAGCTGTGTACCCTGTCCCGATTTTCGGAAGGGTGCTTGCAGATGGGGAGATATGTGTGAATATGCTCACGGGGTGTTTGAGTGCTGGCTGCACCCAGCACAATATCGGACCCGACTTTGCAAAGATGGCACAAATTGCTCAAGGAGAGTCTGCTTCTTTGCACACAGGACTGAGGAACTGCGACCGCTGTATGTTTCGACTGGCTCTGCAACTTCTGGGGCTTCTGCTATGGAATATAATACAGTCATGAACCTTCTACCTGGTTCTCCATCTTCAGTCCCTATGATGTCTCCATCACCGTTCACTCCTCCTATGTCTCCCTCTGCGAATGGCATGTCTCACTCATCCATGGCGTGGTCTCAACCAAATGTACCTGTCTTGCATCTTCCAGGAAGCAATATTCAATCCAGCCGCCTAAGATCTTCTTTGAGTGCAAGAGACATCCCTGCGGAGGACTTCGATTATCTGAGCGATTTTGATATGCAACAACAGCAGCTCGTTAATGACTTGAACTGTCTTTCTCAGCCACCATTAAGTTCAAACTCATTGAGCCGTTCTGGTCGGCTGAAGACTCTGACTCCTTCGAATCTTGACGATCTCTTCTCTGCTGAGAGTTTATCTCCCAGATACTCCGATCAAGCTTTGGCTTCAGCTGTTTTCTCCCCTACACACAAATCAGCTGTTATCAATCAATTTCAGCAGCAACAAAATATTTTGTCACCAATCAATACAAATTTCTCTCCTAAAAATGTTGACCACCCTCTATTGCAGGCTTCCTTTGGGGTTCCATCATCTGGGAGGATGTCTCCACGAAATCTGGAACCGATCTCTCCCATGGGCTCTCGCTTGTCCATGTTAGCTCATAGAGAGAAACAGCCACCGTTTGGCAGCCTCAGCTCACGTGAACTAGGTGCCAATTCTGCTTCTGCTGTTGGTTCCCCTACAAGTTCTTGGTCTAAATGGGGACCTTCTAATAGAAGACCTGATTGGGCAGTCAATGCAGATGAAATGGGTAAACTTAAGCAATCATCGTCCTTTGAGCTTGGGAACAATGGAGAAGAACCAGATTTATCATGGGTTCAATCGCTTGTAAAAGAATCTCCAACTGAGATAAAAGAAAAGCAGGCTTATCCCAACTCAGGTGGCAATAATTTTGTATCTGAAGGTGAGAGTTCTAACATGAACTCCCAAATGGAGTCAGTTGACCATGCTGCATTGGGAGCATGGCTCGAGCAAATGCAGCTCGATCATCTCGTCGCACAACAAAACTGA | 2103 | 45.84 | MGSVMNNLTVETDDAFSSLLELAANDDIDAFKRSIERDPSGIDEIGLWYGRLRGSKQMANEQRTPLMVAATYGSIEVLKLILSLSCADVNRAVGLDRSTALHCAASGGAANAVEIVKLLLAAGADSSMVDGNGHRPVDVIVAPPRHAEFKSILTELLRTYGLSGEGHLDVLKGARNLLSPRPSSPPNAPSSASELVSSPTKSKLNDFPMFSPSEKKEYPVDISLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRWGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHRTEELRPLYVSTGSATSGASAMEYNTVMNLLPGSPSSVPMMSPSPFTPPMSPSANGMSHSSMAWSQPNVPVLHLPGSNIQSSRLRSSLSARDIPAEDFDYLSDFDMQQQQLVNDLNCLSQPPLSSNSLSRSGRLKTLTPSNLDDLFSAESLSPRYSDQALASAVFSPTHKSAVINQFQQQQNILSPINTNFSPKNVDHPLLQASFGVPSSGRMSPRNLEPISPMGSRLSMLAHREKQPPFGSLSSRELGANSASAVGSPTSSWSKWGPSNRRPDWAVNADEMGKLKQSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKQAYPNSGGNNFVSEGESSNMNSQMESVDHAALGAWLEQMQLDHLVAQQN | 700 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 399944 | 402046 | + | Carg01249-RA | Car06g00061 | 149797 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car06g00061 | 700 | Pfam | CCCH-type zinc finger | 281 | 301 | IPR041367 | - | |
Car06g00061 | 700 | MobiDBLite | consensus disorder prediction | 576 | 600 | - | - | |
Car06g00061 | 700 | MobiDBLite | consensus disorder prediction | 188 | 207 | - | - | |
Car06g00061 | 700 | Pfam | Ankyrin repeats (3 copies) | 61 | 127 | IPR002110 | GO:0005515 | |
Car06g00061 | 700 | ProSiteProfiles | Zinc finger C3H1-type profile. | 281 | 303 | IPR000571 | GO:0046872 | |
Car06g00061 | 700 | ProSiteProfiles | Ankyrin repeat profile. | 96 | 131 | IPR002110 | GO:0005515 | |
Car06g00061 | 700 | ProSiteProfiles | Ankyrin repeat region circular profile. | 96 | 130 | - | - | |
Car06g00061 | 700 | MobiDBLite | consensus disorder prediction | 567 | 607 | - | - | |
Car06g00061 | 700 | MobiDBLite | consensus disorder prediction | 650 | 676 | - | - | |
Car06g00061 | 700 | MobiDBLite | consensus disorder prediction | 176 | 210 | - | - | |
Car06g00061 | 700 | MobiDBLite | consensus disorder prediction | 647 | 676 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Car06g00061 | Car14g00415 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car06g00061 | Car-Chr6:399944 | Car14g00909 | Car-Chr14:5436453 | 0 | dispersed | |
Car14g00415 | Car-Chr14:2109824 | Car06g00061 | Car-Chr6:399944 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
3627 | PF12796 | Ank_2 | 8.30E-09 | CL0465 | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car06g00061 | - | - | csv:101207646 | 1180.62 |