Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00074 ATGGCTTCCTCCAATATTAAAACCAGCTCCATCAGTGAAGAAGAAGAAGAAGCACGACAACTACTCCATCATCATCATCATCAACAACAACAACACCAACAACAACAACATCAGCTTTTGCAAACTCCAAACTTTGTCATCCCCAAAAATCCATCATCATTCAGCTTCCAAAATCAAGACTTTCATCATCATCAATTACCTTTCTCCATGAATCTCCCTTCCATCTCTCCAAATTTCATAAGCAAAGATGGAGGAGGTGATGATTTGGGAGAATTGGATCATGCCCTCTTTCTATATCTTGATGGACAAGAACCCTCCACAAACATCACCCAACAAGATCAAAGACAGAGTACGGGGATGAGGCCGCCGACGTTGAACATCTTCCCGTCGCAGCCGATGCACGTCGACCCATTACCAGCAAAAGCAAACACAGCATTGGTTAACCATGGTGATTCAAAGATCAAAGCATCAGAGCCATCCAAGGAGTTGGCCAACCAACGCAGCGGTGGAGCCACTCCATCCGGACCACCCCCAAACCCAAACCCAAACCCAAACCCAACTACAACAATCACCGAACCTCATGCCAAACCTCCAAAACGTGAGGCTAATAAGAAAGGGCTGACCTCAAGCTCAGAGCAAGAAGGACCCAAAACTCCAGACCCCAAGACTCTTAGAAGGCTGGCTCAGAACCGAGAGGCCGCAAGAAAAAGCAGGCTAAGAAAAAAGGCCTATGTTCAGCAGTTGGAGCTGAGTAGGATTAAGCTGACGCAGCTGGAGCAAGAGCTACAAAGAGCAAGAACTCAGGGTATGCTTGTGGGTGGCGGAGCAGCCATTTTAGGAGCTGACCAAGGACTTCCCCCCGGTTTCCATAACCTCAGCTCCGATGCTGCGGTGTTCGACATTGAGTATAGGCGGTGGCAGGAGGAGCACCACCGGCTGATGTGCGAGCTCCGAGCAGCTGTGCAGGAGCATTTACCGGAAAACGAGCTCCGATTATTTGTCGACAACTGCCTTGTCCACTACGACGAGGTTTTGAACTTGAAAATGATGGTGGCTAAGTCCGACGTCTTCCACCTCGTCTCCGGCATGTGGAAGACGCCGGCGGAGAGATGCTTCCTGTGGATGGGCGATTTTAGGCCATCTGAACTCCTTAAGATAGTAATGGGTGAAATAGAGCCATTAACTGAGCATCAAATATTGAACATTTGTGGATTGCAACAATCCACACAAGAGAGCGAAGAGGCATTGTCTGAAGGCCTTGAAGCCCTTAACCAATCCTTATCAGACACCATCGCCGCTGATTCATTGAGTAACCCTCCCAATATGGCTAACTACATGGGCCAGATGACCTTAGCCATCAACAAGCTCTCGACCCTCGAAGGCTTTGTACGACAGGCAGATCATTTGAGACATCAAACCATTCATCGATTGCATCAAATGTTGACGACCCGACAAGCTGCACGATGTCTGCTAGCCATTGCGGAGTATTTTCATCGGCTTCGAGCTCTTAGTTCCTTGTGGTTAGCTCGACCGAGGCAGGATTGA 1545 48.61 MASSNIKTSSISEEEEEARQLLHHHHHQQQQHQQQQHQLLQTPNFVIPKNPSSFSFQNQDFHHHQLPFSMNLPSISPNFISKDGGGDDLGELDHALFLYLDGQEPSTNITQQDQRQSTGMRPPTLNIFPSQPMHVDPLPAKANTALVNHGDSKIKASEPSKELANQRSGGATPSGPPPNPNPNPNPTTTITEPHAKPPKREANKKGLTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLELSRIKLTQLEQELQRARTQGMLVGGGAAILGADQGLPPGFHNLSSDAAVFDIEYRRWQEEHHRLMCELRAAVQEHLPENELRLFVDNCLVHYDEVLNLKMMVAKSDVFHLVSGMWKTPAERCFLWMGDFRPSELLKIVMGEIEPLTEHQILNICGLQQSTQESEEALSEGLEALNQSLSDTIAADSLSNPPNMANYMGQMTLAINKLSTLEGFVRQADHLRHQTIHRLHQMLTTRQAARCLLAIAEYFHRLRALSSLWLARPRQD 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 464387 468033 - Carg01236-RA Car06g00074 149810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00074 514 Pfam Seed dormancy control 314 388 IPR025422 GO:0006351|GO:0043565
Car06g00074 514 ProSiteProfiles DOG1 domain profile. 296 510 IPR025422 GO:0006351|GO:0043565
Car06g00074 514 MobiDBLite consensus disorder prediction 173 187 - -
Car06g00074 514 Pfam bZIP transcription factor 222 258 IPR004827 GO:0003700|GO:0006355
Car06g00074 514 Coils Coil 241 268 - -
Car06g00074 514 Coils Coil 303 323 - -
Car06g00074 514 MobiDBLite consensus disorder prediction 103 125 - -
Car06g00074 514 MobiDBLite consensus disorder prediction 1 38 - -
Car06g00074 514 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 220 264 IPR004827 GO:0003700|GO:0006355
Car06g00074 514 MobiDBLite consensus disorder prediction 10 24 - -
Car06g00074 514 MobiDBLite consensus disorder prediction 103 225 - -
Car06g00074 514 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 225 240 IPR004827 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g00074 Car14g00399 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00074 Car-Chr6:464387 Car14g00465 Car-Chr14:2438490 4.20E-130 dispersed
Car13g00231 Car-Chr13:4225480 Car06g00074 Car-Chr6:464387 1.40E-114 transposed
Car18g00615 Car-Chr18:7367620 Car06g00074 Car-Chr6:464387 1.86E-110 transposed
Car14g00399 Car-Chr14:2012271 Car06g00074 Car-Chr6:464387 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3630 PF14144 DOG1 1.90E-30 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00074 K14431 - csv:101204923 795.423