Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00077 ATGCTGCAACAGCGTCCGTTTACGTATTTTAGTGTCGTCGTCTATTCGACGATTCTCACTTCGCTGGCTCGGGCGTTCACTAACAGGCCGGATGTTGTAGCTCTTCAGGATCTGTACGGTGCTTTGAACTATCCACATGAGCTTATAGGATGGAGAAAATATGGTGGTGATCCTTGTGTGGAATCATGGACTGGAGTATCTTGCTCCGGGTCATCTGTAATATACCTTAAACTCCGCGATTTAAACCTCACTGGGAATCTTGGAGGGCAGCTCAACAACCTCAACAATTTGAAGCAACTGGATGTTAGCTCGAATAGACTTACGGGTGAAATTCCCCATAGCTTGCCTCATAATGCGACTCATATAAATATGGCATTCAACCATTTAAGCCATAACATTCCACATACTTTATCTTACATGGGAAATCTCCGTCATTTAAATCTGAGCCATAATACTCTATCTGGTGTGATTGGGAATGTGTTCAGTGGTTTACAGAATTTGAGAGAGATGGATTTGTCATATAATGACTTCACTGGAGATTTGCCAAGATCATTAGGTTCCATGACAAACATCACTAGACTGAACATCCAGGACAATAGTTTTAGTGGCATTATTCCAGAAAATTTTAGAACTATTCCAAATTTGTGGATTGGGGGAAATAGGTTTCATGCAAGAGTCAATTCTCCACCCTGGGATTTCCCCCTGGAAAAAGCACCTATGGTGCGAAACATCAGTGGTCCTCCAACAACCAAGTCGAATTCAATCCAGAATTATCCCTCTCGTGGTGTCAGGCAAGAGAAGAAAAGGCTTGGTCCTGGTGGAATACTTCTCCTGGTTGGCGGGTTAACACTAGTTGTAACCTTTGTAGCTCTCTTCATTGTATCCGTCATTAGCAATATGATACCCCGATCATTCCCTCTGGGCAAAGCTGAAGATGGTTTGTCCACCGCACCAGAAGAAAACTCACAGAGCTTGCCCCTGAATTCTCTACTCATGGGTGGTCAAAGGTCTATAGCTTCATTAAATCGCACGAGAACTGAGAAAGTTTCTGGAAGACAAGGTTTCTCAAAGAGATGCAATCTCCCAGTGGGAACAAAAATGTACACTCTGTCAGAGCTTCAATCAACCACAAACAACTTTAGTCAAGAGAATCTTCTTGGAGAGGGATCTCTTGGTGCTGTTTATAGAGCTGAATTTCCTGATGGCCAAGTTTTGGCGGTGAAAAACATCAACATGGGAGCACTCTCTCTTACAGAAGAAGAGAAATTTCTGGATGTCGTATGGACTGCTTCCCGTTTGAGGCACCCGAACATTGTTACACTGCTTGGATATTGTGTAGAGCATGGACATTATTTCCTCGGATATGAATATGTTCGAAATCTGTCTCTTGATGAAGCTTTACACTGTGAATCTTTCACGCCTCTGTCATGGACTGTCCGTCTCCAGATTGCTCTTGGAGTTGCTAGGGCTTTAGATTATTTGCATAGAAGTTTTTTCCCGCCAGTTGCTCACTGCAATCTGAAGGCTTCCAACATCTTACTTGACGAAGAACTGATTCCTCGTATTTATGGTTGTGGGCTGTCTGTTGCGAGGCGACTTGTGACCAGCAGAGTTAAAACGAGGGCTTCTGAGATTGCCAGTGGTGACAGAGGCTACCTTGCACCTGAACATGGCCAGCCAGGATTTGATAATACCAGAAGTGACGTGTATTCCTTTGGAGTGTTGCTTTTGGAGCTTGTCACTGGAAGAAAACCATTTGACAATTCGAAACCCAGGAAAGAACAATCGCTGGTGAAATGGGCTTCATCTCGGCTTCATGACAACGAGAGTTTAGAACAGATGGTTGATCCAGTCATTAAAGGAACATTTTCCTCCAAGTCCCTCTCTCGCTTTGTCGATATTCTCTCCCTTTGTATACAGCCTGTGAAGGAATTCCGACCACCAATGTCTGAAATAGTGGAACACCTAACAAATCTTCGGAGAAAGATGGAGATGACGAAACATGCTGCATCAGAAGGAACTGAAATTGATCCTTTTGAGAAGTCTTTTCGTTCAGCTAACACTGGTTTCGTAAGCTCACCAGCTTACAGCTATTCTGCCACCTCAGTTTAG 2112 43.66 MLQQRPFTYFSVVVYSTILTSLARAFTNRPDVVALQDLYGALNYPHELIGWRKYGGDPCVESWTGVSCSGSSVIYLKLRDLNLTGNLGGQLNNLNNLKQLDVSSNRLTGEIPHSLPHNATHINMAFNHLSHNIPHTLSYMGNLRHLNLSHNTLSGVIGNVFSGLQNLREMDLSYNDFTGDLPRSLGSMTNITRLNIQDNSFSGIIPENFRTIPNLWIGGNRFHARVNSPPWDFPLEKAPMVRNISGPPTTKSNSIQNYPSRGVRQEKKRLGPGGILLLVGGLTLVVTFVALFIVSVISNMIPRSFPLGKAEDGLSTAPEENSQSLPLNSLLMGGQRSIASLNRTRTEKVSGRQGFSKRCNLPVGTKMYTLSELQSTTNNFSQENLLGEGSLGAVYRAEFPDGQVLAVKNINMGALSLTEEEKFLDVVWTASRLRHPNIVTLLGYCVEHGHYFLGYEYVRNLSLDEALHCESFTPLSWTVRLQIALGVARALDYLHRSFFPPVAHCNLKASNILLDEELIPRIYGCGLSVARRLVTSRVKTRASEIASGDRGYLAPEHGQPGFDNTRSDVYSFGVLLLELVTGRKPFDNSKPRKEQSLVKWASSRLHDNESLEQMVDPVIKGTFSSKSLSRFVDILSLCIQPVKEFRPPMSEIVEHLTNLRRKMEMTKHAASEGTEIDPFEKSFRSANTGFVSSPAYSYSATSV 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 478346 483262 - Carg01233-RA Car06g00077 149813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00077 703 Pfam Leucine Rich Repeat 96 116 IPR001611 GO:0005515
Car06g00077 703 Pfam Protein kinase domain 381 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g00077 703 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Car06g00077 703 ProSiteProfiles Leucine-rich repeat profile. 142 163 IPR001611 GO:0005515
Car06g00077 703 ProSiteProfiles Protein kinase domain profile. 380 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g00077 703 Pfam Leucine rich repeat 120 177 IPR001611 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g00077 Car14g00396 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00077 Car-Chr6:478346 Car08g00721 Car-Chr8:4628073 4.64E-140 dispersed
Car14g00396 Car-Chr14:1982682 Car06g00077 Car-Chr6:478346 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88910 PF00069 Pkinase 5.60E-33 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00077 - - csv:101204194 1085.86