Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00088 ATTAGGATTAGTTTATCGTTTGATGAACTGGGATGGACGGGGTTAAGGCTAAGCTCGACGGAATTTCAGCCGCCTTCAAACTCTCCAAATGAAGATGTGAATTTAGCTAATTTGATTGAGGATCCTGTACATAGATTTGGAGACGCTATCAGGTTTAGGACGAGACATCGATGGAGAAGGCGTCAAGTCCAAATTCCTTCTGGAACTCAGAATATTTCATTGGAATTGAGTGAAATTATGGTCAATTCAGTCAATGGGAATTCATTACAGCCATTACAGGCTGGTGAGGGTAGTATTACTGCTGAGGAAAGGAAAAATGAAGCAGGGAAAACTTGTGAAATTAACAATGAAGCTTTGGAAGATGAAAAGGCAGAGAATAAGAGTGATGTTGAAAAGGGCAGTGACTCTGATGGGAGTTTCTTTGATTGTAATATATGTCTGGACTTGGCTAGGGACCCTGTTGTAACTTGTTGTGGTCACCTATACTGCTGGCCGTGCCTTTATCGATGGCTACATCTACATTCTGATGCCAAGGAATGCCCTGTATGTAAAGGAGAGGTTACCATGAAGACTGTGACGCCAATTTATGGTCGTGGCAGCAACACGCCTATGACAGAGGAGGATGCTGCACTTAAGATTCCTCTAAGGCCCCATGCTCGGAAGGTTGAAAGTTTGAGACAAACCATCCAGAGGACTGCACTTAATTTCCCTATGGATGAGATGATTCGTCGATTGGGGAATAGATTTGATTTCAATCGTGATCTAGACCAACCGTCGGAGCCAGACGGTTCACATGAAACATTTGGTCGATCTCCGACCTTGTTGAATAGGATTTTAACATCCAGGGGAATTCGTAGAGAACAAATTTCACTGCACCCCCATGATGATGTAGGAGTTTTAGAACTCCCTCATGTGTCTGGCACCGAGGCAGGGGATACCCGTCTTCAATCTCTCCCAGTGCTTCGATCATTACTACACAGGACAAGAGTTTCTTCTCTTACCTCTGCGTTTAATACTGCTGATAGGCTTCCAGAGGGCTTTTTGTATACCGATCCGCTTGTTCCTAGACATCAGGAGCAGCCTCCTCCGCCTGTGGAGGATAGAGATTCTTTCTCTAGCATTGCTGCTGTTATCAATTCTGAGAGTCAAATGGACACCGCTGTAGAAATTGATTCCATGGTCTCCCATTCAACATCATCATCCAGAAGAAGAAATGATTCTTTGCAGGTTTCCGATGTAGACAGTGGAAACTCTCGGGCGCCCAGAAGAAGAAGATTGGCATGA 1284 44.39 IRISLSFDELGWTGLRLSSTEFQPPSNSPNEDVNLANLIEDPVHRFGDAIRFRTRHRWRRRQVQIPSGTQNISLELSEIMVNSVNGNSLQPLQAGEGSITAEERKNEAGKTCEINNEALEDEKAENKSDVEKGSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSDAKECPVCKGEVTMKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNRFDFNRDLDQPSEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPHVSGTEAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 608594 610938 + Carg01221-RA Car06g00088 149824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00088 427 MobiDBLite consensus disorder prediction 388 427 - -
Car06g00088 427 Pfam Zinc finger, C3HC4 type (RING finger) 143 188 - -
Car06g00088 427 ProSitePatterns Zinc finger RING-type signature. 158 167 IPR017907 -
Car06g00088 427 MobiDBLite consensus disorder prediction 388 416 - -
Car06g00088 427 ProSiteProfiles Zinc finger RING-type profile. 143 184 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00088 Car-Chr6:608594 Car12g00466 Car-Chr12:2941124 8.09E-28 dispersed
Car14g00934 Car-Chr14:5640241 Car06g00088 Car-Chr6:608594 8.07E-37 transposed
Car11g01267 Car-Chr11:10505168 Car06g00088 Car-Chr6:608594 3.45E-07 transposed
Car14g00377 Car-Chr14:1896660 Car06g00088 Car-Chr6:608594 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00088 K10666 - csv:101220497 691.034