Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00089 ATGGAGTTGGGTTTGAGGCTTGGTGATGCTCCCAATTCAAATAATCCATTTGGGGTTCGCTCTATTCCTTCTTCTTCTTCTCTCATGGCTTTAGGGTTTTGTGTTGGATTGGGACGTGGTTCTGGTTCTGGTTCCGGTTCCGGTTCCGGTTCCGGTTTGGTTCGTGATGAGGATGGAAGAGATGTAAAAGATGAAGATGAGGATGATGATGAAAAAGCTATTCCCGGTTCTGGGTACGGTTTGGATCCGCCGGTTCAGCTGGATCTTCTTCCTTTGTCTCCGGTTCCTCGTTCTTCTCATCAATCTTCTTCTCCCCTTCCATTTTCCTGCCTTTCTCATCGCTTGATGCCGGAACTGGGTTGTACGGACAAAGTATTGGACGTAAACCGGCCGCCGGCGTTGGCGGCGGGCGTGGCAATGGTACCGGCGGAGGAGACAGAAGACAAGTCTCCGAACAGTGCGGTAACATCTTTCCAAATGGATTTTGGGGTCAGAAATGGAGGAGGAAGAGGAAGAACAAGAAGCAAGAGATCATCAGACATGGAAATGGAGACCGAAAGGTCGTCGTCAAGAATCAGTGACGATGAAGAAAACGCGTCTGCTCGGAAAAAGCTCCGACTTTCTAAAGAACAATCGGCTTTTCTCGAACAAAGCTTCAAACAACACAGCACCCTCAATCCTAAGCAGAAGGCAGCACTGGCCAAGCAGCTAAATCTCCGACCAAGACAAGTGGAGGTTTGGTTTCAAAACAGAAGAGCAAGGACAAAGTTGAAGCAGACAGAAGAGGATTGTGAGTACTTAAAGAGATGGTGTGAGACATTGACAGAAGAGAACAGAAGATTACAAAAGGAACTTCAAGAACTAAGAGCCTTCAAAGCTTCTCAGCCGTTTTACAGTCACCTCCCAGCCACCACCCTCACCATGTGCCCGTCCTGCGAGCGGGTCGTCGCCACCGCTCCCGCCGCCTCCATCGCCACCACCTGCACCATCACCGCCGCCCCGCCAAGGATATTGATATGA 1020 50.0 MELGLRLGDAPNSNNPFGVRSIPSSSSLMALGFCVGLGRGSGSGSGSGSGSGLVRDEDGRDVKDEDEDDDEKAIPGSGYGLDPPVQLDLLPLSPVPRSSHQSSSPLPFSCLSHRLMPELGCTDKVLDVNRPPALAAGVAMVPAEETEDKSPNSAVTSFQMDFGVRNGGGRGRTRSKRSSDMEMETERSSSRISDDEENASARKKLRLSKEQSAFLEQSFKQHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTKLKQTEEDCEYLKRWCETLTEENRRLQKELQELRAFKASQPFYSHLPATTLTMCPSCERVVATAPAASIATTCTITAAPPRILI 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 617525 619967 + Carg01220-RA Car06g00089 149825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00089 339 Coils Coil 271 294 - -
Car06g00089 339 Pfam Homeobox associated leucine zipper 258 290 IPR003106 GO:0006355|GO:0043565
Car06g00089 339 ProSitePatterns 'Homeobox' domain signature. 233 256 IPR017970 GO:0000981|GO:0006355
Car06g00089 339 MobiDBLite consensus disorder prediction 1 21 - -
Car06g00089 339 MobiDBLite consensus disorder prediction 40 105 - -
Car06g00089 339 ProSiteProfiles 'Homeobox' domain profile. 198 258 IPR001356 GO:0003677
Car06g00089 339 MobiDBLite consensus disorder prediction 142 204 - -
Car06g00089 339 Pfam Homeodomain 202 256 IPR001356 GO:0003677
Car06g00089 339 MobiDBLite consensus disorder prediction 173 204 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g00089 Car14g00376 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00089 Car-Chr6:617525 Car08g00467 Car-Chr8:2988310 6.29E-88 dispersed
Car15g00884 Car-Chr15:5258409 Car06g00089 Car-Chr6:617525 2.37E-47 dispersed
Car14g00376 Car-Chr14:1884739 Car06g00089 Car-Chr6:617525 2.96E-118 wgd
Car17g00882 Car-Chr17:7382958 Car06g00089 Car-Chr6:617525 2.52E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3633 PF00046 Homeodomain 1.20E-15 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00089 K09338 - csv:101222778 304.679