Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car06g00089 | ATGGAGTTGGGTTTGAGGCTTGGTGATGCTCCCAATTCAAATAATCCATTTGGGGTTCGCTCTATTCCTTCTTCTTCTTCTCTCATGGCTTTAGGGTTTTGTGTTGGATTGGGACGTGGTTCTGGTTCTGGTTCCGGTTCCGGTTCCGGTTCCGGTTTGGTTCGTGATGAGGATGGAAGAGATGTAAAAGATGAAGATGAGGATGATGATGAAAAAGCTATTCCCGGTTCTGGGTACGGTTTGGATCCGCCGGTTCAGCTGGATCTTCTTCCTTTGTCTCCGGTTCCTCGTTCTTCTCATCAATCTTCTTCTCCCCTTCCATTTTCCTGCCTTTCTCATCGCTTGATGCCGGAACTGGGTTGTACGGACAAAGTATTGGACGTAAACCGGCCGCCGGCGTTGGCGGCGGGCGTGGCAATGGTACCGGCGGAGGAGACAGAAGACAAGTCTCCGAACAGTGCGGTAACATCTTTCCAAATGGATTTTGGGGTCAGAAATGGAGGAGGAAGAGGAAGAACAAGAAGCAAGAGATCATCAGACATGGAAATGGAGACCGAAAGGTCGTCGTCAAGAATCAGTGACGATGAAGAAAACGCGTCTGCTCGGAAAAAGCTCCGACTTTCTAAAGAACAATCGGCTTTTCTCGAACAAAGCTTCAAACAACACAGCACCCTCAATCCTAAGCAGAAGGCAGCACTGGCCAAGCAGCTAAATCTCCGACCAAGACAAGTGGAGGTTTGGTTTCAAAACAGAAGAGCAAGGACAAAGTTGAAGCAGACAGAAGAGGATTGTGAGTACTTAAAGAGATGGTGTGAGACATTGACAGAAGAGAACAGAAGATTACAAAAGGAACTTCAAGAACTAAGAGCCTTCAAAGCTTCTCAGCCGTTTTACAGTCACCTCCCAGCCACCACCCTCACCATGTGCCCGTCCTGCGAGCGGGTCGTCGCCACCGCTCCCGCCGCCTCCATCGCCACCACCTGCACCATCACCGCCGCCCCGCCAAGGATATTGATATGA | 1020 | 50.0 | MELGLRLGDAPNSNNPFGVRSIPSSSSLMALGFCVGLGRGSGSGSGSGSGSGLVRDEDGRDVKDEDEDDDEKAIPGSGYGLDPPVQLDLLPLSPVPRSSHQSSSPLPFSCLSHRLMPELGCTDKVLDVNRPPALAAGVAMVPAEETEDKSPNSAVTSFQMDFGVRNGGGRGRTRSKRSSDMEMETERSSSRISDDEENASARKKLRLSKEQSAFLEQSFKQHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTKLKQTEEDCEYLKRWCETLTEENRRLQKELQELRAFKASQPFYSHLPATTLTMCPSCERVVATAPAASIATTCTITAAPPRILI | 339 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 617525 | 619967 | + | Carg01220-RA | Car06g00089 | 149825 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car06g00089 | 339 | Coils | Coil | 271 | 294 | - | - | |
Car06g00089 | 339 | Pfam | Homeobox associated leucine zipper | 258 | 290 | IPR003106 | GO:0006355|GO:0043565 | |
Car06g00089 | 339 | ProSitePatterns | 'Homeobox' domain signature. | 233 | 256 | IPR017970 | GO:0000981|GO:0006355 | |
Car06g00089 | 339 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Car06g00089 | 339 | MobiDBLite | consensus disorder prediction | 40 | 105 | - | - | |
Car06g00089 | 339 | ProSiteProfiles | 'Homeobox' domain profile. | 198 | 258 | IPR001356 | GO:0003677 | |
Car06g00089 | 339 | MobiDBLite | consensus disorder prediction | 142 | 204 | - | - | |
Car06g00089 | 339 | Pfam | Homeodomain | 202 | 256 | IPR001356 | GO:0003677 | |
Car06g00089 | 339 | MobiDBLite | consensus disorder prediction | 173 | 204 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Car06g00089 | Car14g00376 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car06g00089 | Car-Chr6:617525 | Car08g00467 | Car-Chr8:2988310 | 6.29E-88 | dispersed | |
Car15g00884 | Car-Chr15:5258409 | Car06g00089 | Car-Chr6:617525 | 2.37E-47 | dispersed | |
Car14g00376 | Car-Chr14:1884739 | Car06g00089 | Car-Chr6:617525 | 2.96E-118 | wgd | |
Car17g00882 | Car-Chr17:7382958 | Car06g00089 | Car-Chr6:617525 | 2.52E-86 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
3633 | PF00046 | Homeodomain | 1.20E-15 | CL0123 | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car06g00089 | K09338 | - | csv:101222778 | 304.679 |