Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00101 ATGGCAGAAGAGGATACCCTCTCTGAAATTTCTGAATCTTCTTCGTCTTCTTCAGCTCTCACCTCTCCAATGTCTACTCCCTTGAGGAAGGTGTTCTGTAGAATTTCTGGCCTTGCAAGTTCTCTGAGAAGAAACACAGCCCCTCACAGTCGAAGAATCTTGCACAGAGATGTTGAGCAGCAAGAGTTTCAATATGCAAACTCTCATTGCCTCTCTTCTTACTACAGTGTTTTTGTTGCTCGTCTTGCCATAATGGTGATGCTTGCTATTTTGATTGGGCTGTTGACAGTTCTCACATGGCATTTCACAAAGAGCTACACAGCAGAGTCACTACATAGCTTGGCGTATGGTCTTCGCCATGAACTGCTGCAGCGCCCGATCTTACGGATGTGGAGTGTCTTAAATTCCACGGCTGAAATAACCACAGCTCAGGTTAAGCTCTCAGAATATGTAATGAGGAAGTACAGCAAGCCTACTAATCAAGCAGAGCAAGTTGAGCTGTATGAAGCAATGAGGGATGTTACGTGGGCGATGTTTGCGAGTCGAAAAGCTCTTAATGCCATAACCATCAATTACAAGAATGGCTTTGTCCAGGCATTCCATCGAGATCATTCAAGCAACAATACGTTTTATATTTACTCAGATCTTACAAACTATACCATTAGTGCCACCGAATCGCATAATATCAATCGGCTTTCGTCGGGTGAAGGGTGGTCAGAGCCACACATACACGGCAATATGTCTGCAAAATGGTATAGGGAACCACTTGATCCCATTAGTGGCCAGAAGATCGGGAAAGCAAAGCAAATCCCACCAGAGGACTTGATTAGTATTGCTGGCATTTCACAATTAGCAGATGGTGTTGCCTCATGGCATGTTACTGTGAGCAAGTACATGGATACACCATTGCTTTCTGCAGCCCTGCCTGTTTCCGATGCTTCGAATGAAAGCATAGTTGCGGTGGTGGGCGTAACAACCTCACTTTATAGTGTAGGTCAACTAATGAAGGAGCTTGTTGAGTTCCATAGTGGACATATTTATCTAACCTCTCAAGAGGGCTACTTGCTTGCTACTTCAGCCAATGCTCCCCTGTTAAGAAATACATCAAGTGGTCCAAAGCTCACGATGGCTGTTGATTCCCAGGACGATGTGATTCGATTAGGAGCAGAGCGGTTACAGAAAACCTATGGAAACAATTTTCCTCCTGGACATGAGGTTCATGAAGAGAATGTCAAGCTTGGTGATCAGCAATATTACATCGACTCGTTTTTTCTTAATCTGAAGAGGCTTCCTATTGTGGGGGTTGTCATCATTCCTAGGCAATACATAATGGGAAAGGTAGATGAGAGAGCTGTCAAAACATTGGTTATACTGATTTCTGCATCCTTATGCATCTTAGTTATTGGATGTCTATGCATTTTGATTCTGACGAAAGGAGTATCTAAGGAAATGAAACTAAGGGCAGAACTAATAAGCCATCTCGATGCAAGAAGAAGAGCAGAGGCATCTAGTAATTACAAGAGTCAATTTCTAGCGAATATGAGTCATGAACTGAGGACGCCGATGGCAGCAGTAATTGGATTACTGGACATTCTAATGTGTGATGACTGTCTCAATAATGAACAATTCGCAACGGTTACTCAAATTAGAAAATGCTCAACCGCTCTACTCCGACTTCTCAACAACATTCTAGATCTAAGCAAGGTTGAATCCGGAAAGCTAGTTTTGGAAGATGCCGAGTTTGACCTGGGACGAGAACTTGAAGGGCTTGTCGATGTGTTCTCTGTGCAGTGCGTTAACCATAATGTGGAGACTGTATTGGATCTCTCTGATGATATGCCAAAATTAGTTCGAGGAGACTCGGGTCGAGTTGTTCAAATTTTCACGAATTTGATCAGCAATTCTATCAAATTCACAACCTCTGGTCACATCATTCTTCGGGGGTGGTGTGAGACGTCGAATACTCTCAACGACGTAGGCAATTTCTGTACTGATCAGAAGAAATCGCGATTTCCTAATTGGACGAAGATGAAACAACAGGGAGACCACACAAAGAATGAGAAAGATAACAAAATGACCTTGTGGTTTGAACTTGATGACACTGGATGTGGGATGGATCCAAGAAAATGGGAATCTGTTTTCGAGAGCTTTGAGCAAGCAGATCCCTCGACAACCCGAACGCATGGTGGAACGGGTCTTGGATTATGCATCGTACGTACCTTGGTTAACAAGATGGGGGGAGAAATCAAGGTTGTAAAGAAGAACGGCCCGGGAACGTTGATGCGACTTTATTTGGTTCTTAGCACGCCTGTAGATTCGATGGATCATCACTGTCAGCTTGATTTCACACAACATAATGCAGTGGTACTGCTTGCACTCCGTGGCAGCATGAGTCGATTAATCACGTCACAGTGGCTTCGTAAAATCGGACTGCTCACGTTAGAAGCTTCCGAGTGGAATGAACTAACACTAATCCTTCAGGAACTCTTTCAAGCCAGAAGTTCAGAAACTAAAAAGGGATTTAGTCCACAGGATTCACTAGGTGAGCCATTACGAGCAGAGCTAATGAGAATTAAAGATATGAAAAGCCAAATATTCATCATCGTTGCCGATATCGGGATACTGGACTTGAGCACGGATATTTGGAAGGACCAGCTTTACTTCCTTGATAAGTACTCTGGAAAAGCAAAATTCGCATGGATGTTAAACCACGATACGTCAAACGCCATTAAGATGGAGCTCCGGGGAAAAGGGCACATTATAATGAACAATAAGCCATTGTACAAAGCCAAAATGGTTCATATTTTGGAAGCTGCTATGAAGGACAGAAATCTTGAGTTGCAGAAGAAAAGCGCTTCAAGAATTGCATCAAAGGAAGGGAATTATCATGAATGTCTTGAAATTGATTCCACTCAGTTTGAAACTGCCAGCTCCGATGATTCTGATATATCTGAACTTGGCAATTGCAACTCTCAGTGTGCAAAATTTCAAGTCAAAGACAGTCTAGAAGAAACGATAGCGAAACCATGTCAGTCGCCATTTTCGCCCGTTAACCATAGCTTAGTTGAGCTAACTCATGTACATTTGAACGAGAGTAATATGAGGACTGGGGATCCACGTGACACGAGGCAGAATTCGTCAAAGCCTCAATGTCAAAGTTCGGAATCCAGTGGACAGAACTTGGGATGCAACTATCCTACAAGCCAAGGAGAATCACATTCGAAGAACGTTCCGAGTAAAAGATCTCTTGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCGGTTCTCCAAAGAGTAACGACGATAATGCTCGAAAAGATGGGAGCCATGGCCATTGCTGTCGGAGACGGACTGCAGGCTGTAGAAGCTATAACTGCCATGCTCAGTGCTGAAGAGCAAAGAAGGGAATGCCCCACAAGATATGACTTGATATTAATGGACTGCCAAATGCCAAGGATGGATGGCTATGAAGCAACGAAGGCTATTAGAAAGCTAGAAGCGGGATCGAGGCTTCACGTTCCAATTGTAGCATTGACAGCCCACGCGATGTCGTCTGATGAAGCGAAATGCTTGGAGGTCGGAATGGATGCATACCTAACAAAGCCAATCGACTATAAGCTGATGGTATCCACCATACTTTCCCTCGCTCAAAGAAGAGGCTAA 3666 43.7 MAEEDTLSEISESSSSSSALTSPMSTPLRKVFCRISGLASSLRRNTAPHSRRILHRDVEQQEFQYANSHCLSSYYSVFVARLAIMVMLAILIGLLTVLTWHFTKSYTAESLHSLAYGLRHELLQRPILRMWSVLNSTAEITTAQVKLSEYVMRKYSKPTNQAEQVELYEAMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHSSNNTFYIYSDLTNYTISATESHNINRLSSGEGWSEPHIHGNMSAKWYREPLDPISGQKIGKAKQIPPEDLISIAGISQLADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTSLYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSSGPKLTMAVDSQDDVIRLGAERLQKTYGNNFPPGHEVHEENVKLGDQQYYIDSFFLNLKRLPIVGVVIIPRQYIMGKVDERAVKTLVILISASLCILVIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDVFSVQCVNHNVETVLDLSDDMPKLVRGDSGRVVQIFTNLISNSIKFTTSGHIILRGWCETSNTLNDVGNFCTDQKKSRFPNWTKMKQQGDHTKNEKDNKMTLWFELDDTGCGMDPRKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRLYLVLSTPVDSMDHHCQLDFTQHNAVVLLALRGSMSRLITSQWLRKIGLLTLEASEWNELTLILQELFQARSSETKKGFSPQDSLGEPLRAELMRIKDMKSQIFIIVADIGILDLSTDIWKDQLYFLDKYSGKAKFAWMLNHDTSNAIKMELRGKGHIIMNNKPLYKAKMVHILEAAMKDRNLELQKKSASRIASKEGNYHECLEIDSTQFETASSDDSDISELGNCNSQCAKFQVKDSLEETIAKPCQSPFSPVNHSLVELTHVHLNESNMRTGDPRDTRQNSSKPQCQSSESSGQNLGCNYPTSQGESHSKNVPSKRSLEGLRILLAEDTPVLQRVTTIMLEKMGAMAIAVGDGLQAVEAITAMLSAEEQRRECPTRYDLILMDCQMPRMDGYEATKAIRKLEAGSRLHVPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLAQRRG 1221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 666546 671581 + Carg01208-RA Car06g00101 149837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00101 1221 Pfam His Kinase A (phospho-acceptor) domain 507 572 IPR003661 GO:0000155|GO:0007165
Car06g00101 1221 ProSiteProfiles Response regulatory domain profile. 1087 1217 IPR001789 GO:0000160
Car06g00101 1221 MobiDBLite consensus disorder prediction 1043 1076 - -
Car06g00101 1221 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 619 767 IPR003594 -
Car06g00101 1221 Pfam Response regulator receiver domain 1088 1211 IPR001789 GO:0000160
Car06g00101 1221 ProSiteProfiles Histidine kinase domain profile. 513 769 IPR005467 -
Car06g00101 1221 MobiDBLite consensus disorder prediction 7 23 - -
Car06g00101 1221 MobiDBLite consensus disorder prediction 1 23 - -
Car06g00101 1221 MobiDBLite consensus disorder prediction 1032 1079 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00101 - - - csv:101217761 2157.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00101 Car-Chr6:666546 Car20g00576 Car-Chr20:3233680 6.72E-16 dispersed
Car12g00983 Car-Chr12:9906293 Car06g00101 Car-Chr6:666546 1.69E-25 transposed
Car16g01173 Car-Chr16:9965169 Car06g00101 Car-Chr6:666546 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car16g01173 . 31 1206 Histidine Kinase Gene Family AT2G17820 65.6 0.0e+00 1466.1
Car06g00101 . 5 1218 Histidine Kinase Gene Family AT2G17820 63.1 0.0e+00 1424.1
Car04g02077 CST 19 981 Histidine Kinase Gene Family AT2G01830 72.0 0.0e+00 1324.3
Car04g00025 . 28 1008 Histidine Kinase Gene Family AT2G01830 70.5 0.0e+00 1321.6
Car15g00833 CST 20 1012 Histidine Kinase Gene Family AT2G01830 69.7 0.0e+00 1289.2
Car11g01462 . 280 1230 Histidine Kinase Gene Family AT2G01830 53.3 2.9e-274 942.2
Car20g00576 . 302 1245 Histidine Kinase Gene Family AT2G01830 53.4 5.4e-273 937.9
Car07g00626 . 283 1238 Histidine Kinase Gene Family AT2G01830 51.7 3.4e-267 918.7
Car08g00164 . 51 986 Histidine Kinase Gene Family AT2G01830 52.3 2.2e-266 916.0
Car01g01298 CCT 1 1000 Histidine Kinase Gene Family AT5G10720 57.2 1.7e-291 999.2
Car09g00334 CCT 1 996 Histidine Kinase Gene Family AT5G10720 56.6 1.9e-290 995.7
Car05g00833 . 117 1139 Histidine Kinase Gene Family AT1G09570 74.0 0.0e+00 1654.8
Car12g00675 . 24 1118 Histidine Kinase Gene Family AT1G09570 71.5 0.0e+00 1608.6
Car19g00664 . 18 1111 Histidine Kinase Gene Family AT1G09570 54.6 0.0e+00 1209.5
Car14g01399 CST 35 1120 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1194.1
Car06g01329 CST 31 1126 Histidine Kinase Gene Family AT1G09570 52.8 0.0e+00 1162.1
Car14g01399 CST 13 1061 Histidine Kinase Gene Family AT2G18790 79.0 0.0e+00 1669.1
Car06g01329 CST 30 1067 Histidine Kinase Gene Family AT2G18790 77.3 0.0e+00 1613.6
Car18g00423 CST 31 1051 Histidine Kinase Gene Family AT2G18790 59.4 0.0e+00 1228.8
Car13g00449 CST 63 1082 Histidine Kinase Gene Family AT2G18790 59.5 0.0e+00 1226.1
Car19g00664 . 26 1068 Histidine Kinase Gene Family AT2G18790 52.2 0.0e+00 1079.3
Car12g00675 . 28 1052 Histidine Kinase Gene Family AT2G18790 50.9 2.0e-305 1045.8
Car05g00833 . 137 1073 Histidine Kinase Gene Family AT2G18790 55.3 2.1e-299 1025.8
Car19g00664 . 12 1115 Histidine Kinase Gene Family AT5G35840 60.9 0.0e+00 1365.9
Car14g01399 CST 21 1122 Histidine Kinase Gene Family AT5G35840 52.8 0.0e+00 1148.7
Car06g01329 CST 31 1128 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1122.5
Car12g00675 . 24 1109 Histidine Kinase Gene Family AT5G35840 50.4 2.5e-313 1072.0
Car14g01399 CST 30 1122 Histidine Kinase Gene Family AT4G16250 77.1 0.0e+00 1708.7
Car06g01329 CST 34 1128 Histidine Kinase Gene Family AT4G16250 74.3 0.0e+00 1651.7
Car13g00449 CST 64 1144 Histidine Kinase Gene Family AT4G16250 57.8 0.0e+00 1265.8
Car18g00423 CST 38 1113 Histidine Kinase Gene Family AT4G16250 57.4 0.0e+00 1259.2
Car19g00664 . 26 1114 Histidine Kinase Gene Family AT4G16250 51.9 0.0e+00 1106.7
Car12g00675 . 27 1113 Histidine Kinase Gene Family AT4G16250 50.7 0.0e+00 1080.5
Car13g00449 CST 47 1145 Histidine Kinase Gene Family AT4G18130 63.2 0.0e+00 1371.3
Car18g00423 CST 15 1130 Histidine Kinase Gene Family AT4G18130 61.2 0.0e+00 1349.0
Car14g01399 CST 38 1120 Histidine Kinase Gene Family AT4G18130 58.9 0.0e+00 1273.8
Car06g01329 CST 42 1126 Histidine Kinase Gene Family AT4G18130 57.4 0.0e+00 1257.3
Car05g00833 . 140 1073 Histidine Kinase Gene Family AT4G18130 51.0 7.7e-262 901.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005785 2 0 2 1 2 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3634 PF02518 HATPase_c 9.80E-23 CL0025 Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00101 Car_Chr06 FPKM 31.247471 31.999842 17.67491 17.431221 30.258743 25.748869 29.846962 20.374674 21.042543 19.708397