Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car06g00112 | ATGGATTTCATAGCCAATCCTTTTCGGCTTTCTTCTTCCTCCTCGCCTTCGTTTGGGAATCTCTTTGACAGAGTTCGAGAAATTTGCTGCTATGCGGTTTATGCGATTCTTGGCAACATTTTGTCTGCGATCTTCACTTTCTTCTTCGCCCTAGTGGGGACTTTGCTTGGAGCCATGACTGGAGCATTAATTGGCCAAGAAACAGAGAGTGGGTTTGTTAGAGGAGCTGCTGTTGGGGCAATTTCTGGTGCTGTTTTTTCAATTGAAGTCTTTGAATCTTCTTTGGTTCTTTGGCAATCAGATGAATCAGGGATAGGTTGTCTTCTTTATCTGATTGATGTCATTGCAAGCCTCCTCAGTGGACGACTAGTTCGAGAACGGATCGGTCCAGCGATATTGAGCGCAGTTCAAAGTCAGATGGGTGCTGCAGAGACGAGCTTTGACGACATCTCGAACATCTTCGACACCGGCAGCTCGAAAGGACTGCCTGGGGACCTGGTTGAGAAAATTCCCAAGATCATGGTGTCTAAGAACAACAGTGTAGATGCTTATGGAGAAAAAGTCTGTTGTTCCGTTTGCCTTCAGGACTTTCAGCTTGGAGAGACTGTAAGAAGCTTACCATATTGTCATCACATGTTCCATTTGCCCTGCATTGATAAATGGCTTATTACTCATGGTTCTTGCCCTTTATGCAGAAGGGATCTGTAA | 708 | 45.06 | MDFIANPFRLSSSSSPSFGNLFDRVREICCYAVYAILGNILSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAILSAVQSQMGAAETSFDDISNIFDTGSSKGLPGDLVEKIPKIMVSKNNSVDAYGEKVCCSVCLQDFQLGETVRSLPYCHHMFHLPCIDKWLITHGSCPLCRRDL | 235 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 725684 | 727564 | - | Carg01197-RA | Car06g00112 | 149848 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car06g00112 | 235 | Pfam | YMGG-like Gly-zipper | 49 | 85 | IPR027367 | - | |
| Car06g00112 | 235 | ProSiteProfiles | Zinc finger RING-type profile. | 190 | 232 | IPR001841 | - | |
| Car06g00112 | 235 | Pfam | Ring finger domain | 190 | 232 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car06g00112 | Car-Chr6:725684 | Car15g00375 | Car-Chr15:1962422 | 1.74E-17 | dispersed | |
| Car09g00868 | Car-Chr9:5309015 | Car06g00112 | Car-Chr6:725684 | 1.23E-18 | transposed | |
| Car16g01185 | Car-Chr16:10037932 | Car06g00112 | Car-Chr6:725684 | 2.26E-125 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car06g00112 | - | - | cmax:111470226 | 462.611 |