Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00127 ATGATGGATCCTTACCACCACCAGAACCCTCCTCTTCGCGACGATCATCTCCGTTACCTTACCGGAACCACCGCTGGCGCTCTCTACGTCAAAGTCATGACCGACGAGCAATTGGAGACTCTTCGCAAGCAAATTGCTGTTTACGCCACCATTTGCGAGCAGCTTGTTGAGATGCACAAGACTCTTACTGCTCACCAGGATCTCAAAGGAATGAGGTTGGGTAGTGTGTACTATGAGCCATTGATGGCATCTTCCAGCCACAAAATTACTTCTAGACAGCGATGGACTCCGTCGCCCGTGCAACTTCAGATCTTGGAGCGTATATTTGAGCAAGGGAATGGAACTCCTAGCAAGCAAAAGATCAAAGAGATTACCTCTGAACTGGGTCAACATGGGCAAATTTCTGAATCAAATGTCTATAATTGGTTCCAAAACAGGCGTGCTCGATCAAAGAGGAAGCAGCAGGGTACAGCGCCTACGTATGGTGAATCAGAATTGGAGACAGAAGTCGAGTCGCCGAAAGATAAGAAGACAAAACCTGTGGATTTTCAAACTCCTCAAACCTCTGCACCTTTGGGGGAGGACATGGGCTTCCAGAGTCCTGAGATGCACTATGAACTGCATTTCCTGGATCCAAACACCAACAAAGCTGATACTTTGTTTCCATCAAATGGAAGTTCAAAAACCGCAAGAACTTTTAGTCAGATGTCTTCTTATGAAGCAGGGAATGAACAGCTGACAGGAAAGATCGAGACACCAGAAAACTATAGTCTTTACTCGCAAGCAGAAGGATGCATGGCCGAACAACCCTGA 813 46.74 MMDPYHHQNPPLRDDHLRYLTGTTAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTAHQDLKGMRLGSVYYEPLMASSSHKITSRQRWTPSPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQGTAPTYGESELETEVESPKDKKTKPVDFQTPQTSAPLGEDMGFQSPEMHYELHFLDPNTNKADTLFPSNGSSKTARTFSQMSSYEAGNEQLTGKIETPENYSLYSQAEGCMAEQP 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 791500 794514 - Carg01182-RA Car06g00127 149863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00127 270 Pfam Homeodomain 92 152 IPR001356 GO:0003677
Car06g00127 270 ProSiteProfiles 'Homeobox' domain profile. 88 153 IPR001356 GO:0003677
Car06g00127 270 MobiDBLite consensus disorder prediction 167 181 - -
Car06g00127 270 MobiDBLite consensus disorder prediction 148 191 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01590 Car-Chr1:13151809 Car06g00127 Car-Chr6:791500 1.47E-91 dispersed
Car06g00127 Car-Chr6:791500 Car09g00039 Car-Chr9:199267 7.88E-91 dispersed
Car16g01199 Car-Chr16:10130838 Car06g00127 Car-Chr6:791500 9.77E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3635 PF00046 Homeodomain 2.00E-18 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00127 - - csv:101203410 469.159