Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00146 ATGTGTGATGCGATGGAGGAACAGGAATCTGCACAAGATATTCCAGTTGCTTTAGGTGAAGGCAACCAAGTTATTTCTAAAGATGAGCTCCATGATTCTCTCCCTTTGCCAGCTGAGGCAACTCCGAACTCTTGTGAAAATAAGATCAATTCACCTGAAACTCATGTACAGGAAGTCGTACCTCCGGAGGATAATTTAGATAAATCTACGATTCCTCAGCAATCAAATCAAGATTCTGCGAATTCACTTCCCAATCACGACCAAGACTTGGATAAGCCTGATGCAGAACCTGCTTCTGATGTCAAGACTGGGCCTGATGAGTTGCCTCCAAGGGAGTTGGGTCTAGATGCTGCTACTTCCAACACTCACCTGGAAACCGTGCATCCCTCCTTGGATGCTGAGGCCTTTGGGATGCCTGAAACTAAAACGGGTTCTCTTGATGATGCTTCAACAGCCAGTCATGATGAACCTGTAACTCCCCATCCCGTCTCATCATGTATTAAAGCTGAAACAGAGAATGCCATAGAATTGAAGGTCAATGAAGACAATGTTGCTACACCTCACAATGGGCATTCAAATATGAATCACTCGTTTATTTTGGATGAAAATCAAATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTGCTTTCATGAAGGAGCTTGAGAATTTCTTCAGAGAAAGAGGCATGGAATTCAAGCCTCCCAAGTTTTATGGAGAAGGACTGAATTGCCTCAAGTTATGGAGGGCTGTGACTAGATTGGGAGGCTATGACAAGGTATCTTTTGTTGTTGTTTATATACTGTGTTTTTTGTCTGATATATATCTTCCTATGAAAGATAACCTGAGGACATGTACAACAGTTTCATGGACATTTCGAGGATTTTATGAGAAGGCTGTCCTTGATTACGAGAGGCATAAAACCCATGGTGGCGAACTTAGGGTACCTATTGCTTCCAACTCAGAACCTATGAGCATCGAAAACCAGGGATCAGGATCGGGTAGAGCACGAAGAGATGCTGCTGCACGTGCCATGCAGGGTTGGCACTCGCAACGTCTCCTGGGAAATGGTGAAGTTAGTGACCCTATTATCAAGGATAAGAACTCACCTTCAATGCAGAAAAAGGAAAAACAACTCAAAGGAATTGGTGGTATTCTTAAACGTAAGAAACCGTCTTACATGGAGCATACTGTGAAATCGGCACGAACAAAATCATCAAAACCACAGTTGGACGTAGCAGTAGTTGATATTGGACAACCAGCTGATTGGGTCAAGGTCAATGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTCCCCGGACTACTTCGTGAGGAGGTGCGCGTTCAGTCCGATCCAGCAGGACGCTTGGTTATTAGCGGTGAACCTGAACATCCTGATAATCCATGGGGTGTCACGCCCTTTAAAAAGGTGGTCAGCCTACCATCAAGGATTGATCCGCATCAGACTTCTGCCGTTGTCACCTTACATGGGCAGTTGTTTGTTCGCGTTCCATTTGAACAGCTGGAATGA 1548 44.19 MCDAMEEQESAQDIPVALGEGNQVISKDELHDSLPLPAEATPNSCENKINSPETHVQEVVPPEDNLDKSTIPQQSNQDSANSLPNHDQDLDKPDAEPASDVKTGPDELPPRELGLDAATSNTHLETVHPSLDAEAFGMPETKTGSLDDASTASHDEPVTPHPVSSCIKAETENAIELKVNEDNVATPHNGHSNMNHSFILDENQIAEGSESGTEEEQSAFMKELENFFRERGMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVSFVVVYILCFLSDIYLPMKDNLRTCTTVSWTFRGFYEKAVLDYERHKTHGGELRVPIASNSEPMSIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNSPSMQKKEKQLKGIGGILKRKKPSYMEHTVKSARTKSSKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 888062 894466 - Carg01163-RA Car06g00146 149882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00146 515 MobiDBLite consensus disorder prediction 85 109 - -
Car06g00146 515 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 415 515 IPR002068 -
Car06g00146 515 MobiDBLite consensus disorder prediction 132 163 - -
Car06g00146 515 Pfam Hsp20/alpha crystallin family 432 512 IPR002068 -
Car06g00146 515 Pfam ARID/BRIGHT DNA binding domain 217 307 IPR001606 GO:0003677
Car06g00146 515 MobiDBLite consensus disorder prediction 361 381 - -
Car06g00146 515 MobiDBLite consensus disorder prediction 325 344 - -
Car06g00146 515 MobiDBLite consensus disorder prediction 67 84 - -
Car06g00146 515 MobiDBLite consensus disorder prediction 1 114 - -
Car06g00146 515 ProSiteProfiles ARID domain profile. 214 311 IPR001606 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01610 Car-Chr1:13223074 Car06g00146 Car-Chr6:888062 1.97E-65 dispersed
Car16g01214 Car-Chr16:10219954 Car06g00146 Car-Chr6:888062 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3638 PF01388 ARID 5.40E-11 CL0123 Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00146 - - bhj:120091028 792.341