Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00146 ATGTGTGATGCGATGGAGGAACAGGAATCTGCACAAGATATTCCAGTTGCTTTAGGTGAAGGCAACCAAGTTATTTCTAAAGATGAGCTCCATGATTCTCTCCCTTTGCCAGCTGAGGCAACTCCGAACTCTTGTGAAAATAAGATCAATTCACCTGAAACTCATGTACAGGAAGTCGTACCTCCGGAGGATAATTTAGATAAATCTACGATTCCTCAGCAATCAAATCAAGATTCTGCGAATTCACTTCCCAATCACGACCAAGACTTGGATAAGCCTGATGCAGAACCTGCTTCTGATGTCAAGACTGGGCCTGATGAGTTGCCTCCAAGGGAGTTGGGTCTAGATGCTGCTACTTCCAACACTCACCTGGAAACCGTGCATCCCTCCTTGGATGCTGAGGCCTTTGGGATGCCTGAAACTAAAACGGGTTCTCTTGATGATGCTTCAACAGCCAGTCATGATGAACCTGTAACTCCCCATCCCGTCTCATCATGTATTAAAGCTGAAACAGAGAATGCCATAGAATTGAAGGTCAATGAAGACAATGTTGCTACACCTCACAATGGGCATTCAAATATGAATCACTCGTTTATTTTGGATGAAAATCAAATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTGCTTTCATGAAGGAGCTTGAGAATTTCTTCAGAGAAAGAGGCATGGAATTCAAGCCTCCCAAGTTTTATGGAGAAGGACTGAATTGCCTCAAGTTATGGAGGGCTGTGACTAGATTGGGAGGCTATGACAAGGTATCTTTTGTTGTTGTTTATATACTGTGTTTTTTGTCTGATATATATCTTCCTATGAAAGATAACCTGAGGACATGTACAACAGTTTCATGGACATTTCGAGGATTTTATGAGAAGGCTGTCCTTGATTACGAGAGGCATAAAACCCATGGTGGCGAACTTAGGGTACCTATTGCTTCCAACTCAGAACCTATGAGCATCGAAAACCAGGGATCAGGATCGGGTAGAGCACGAAGAGATGCTGCTGCACGTGCCATGCAGGGTTGGCACTCGCAACGTCTCCTGGGAAATGGTGAAGTTAGTGACCCTATTATCAAGGATAAGAACTCACCTTCAATGCAGAAAAAGGAAAAACAACTCAAAGGAATTGGTGGTATTCTTAAACGTAAGAAACCGTCTTACATGGAGCATACTGTGAAATCGGCACGAACAAAATCATCAAAACCACAGTTGGACGTAGCAGTAGTTGATATTGGACAACCAGCTGATTGGGTCAAGGTCAATGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTCCCCGGACTACTTCGTGAGGAGGTGCGCGTTCAGTCCGATCCAGCAGGACGCTTGGTTATTAGCGGTGAACCTGAACATCCTGATAATCCATGGGGTGTCACGCCCTTTAAAAAGGTGGTCAGCCTACCATCAAGGATTGATCCGCATCAGACTTCTGCCGTTGTCACCTTACATGGGCAGTTGTTTGTTCGCGTTCCATTTGAACAGCTGGAATGA 1548 44.19 MCDAMEEQESAQDIPVALGEGNQVISKDELHDSLPLPAEATPNSCENKINSPETHVQEVVPPEDNLDKSTIPQQSNQDSANSLPNHDQDLDKPDAEPASDVKTGPDELPPRELGLDAATSNTHLETVHPSLDAEAFGMPETKTGSLDDASTASHDEPVTPHPVSSCIKAETENAIELKVNEDNVATPHNGHSNMNHSFILDENQIAEGSESGTEEEQSAFMKELENFFRERGMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVSFVVVYILCFLSDIYLPMKDNLRTCTTVSWTFRGFYEKAVLDYERHKTHGGELRVPIASNSEPMSIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNSPSMQKKEKQLKGIGGILKRKKPSYMEHTVKSARTKSSKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 888062 894466 - Carg01163-RA Car06g00146 149882

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00146 515 MobiDBLite consensus disorder prediction 85 109 - -
Car06g00146 515 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 415 515 IPR002068 -
Car06g00146 515 MobiDBLite consensus disorder prediction 132 163 - -
Car06g00146 515 Pfam Hsp20/alpha crystallin family 432 512 IPR002068 -
Car06g00146 515 Pfam ARID/BRIGHT DNA binding domain 217 307 IPR001606 GO:0003677
Car06g00146 515 MobiDBLite consensus disorder prediction 361 381 - -
Car06g00146 515 MobiDBLite consensus disorder prediction 325 344 - -
Car06g00146 515 MobiDBLite consensus disorder prediction 67 84 - -
Car06g00146 515 MobiDBLite consensus disorder prediction 1 114 - -
Car06g00146 515 ProSiteProfiles ARID domain profile. 214 311 IPR001606 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00146 - - - bhj:120091028 792.341
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01610 Car-Chr1:13223074 Car06g00146 Car-Chr6:888062 1.97E-65 dispersed
Car16g01214 Car-Chr16:10219954 Car06g00146 Car-Chr6:888062 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car17g00085 . 1 326 ARID Transcription Factor Family AT1G04880 53.0 9.5e-94 341.3
Car08g00902 . 45 344 ARID Transcription Factor Family AT1G04880 52.0 7.8e-80 295.0
Car16g01214 . 163 432 ARID Transcription Factor Family AT1G20910 59.6 1.5e-87 320.5
Car06g00146 . 206 483 ARID Transcription Factor Family AT1G20910 54.2 4.6e-76 282.3
Car09g00069 CCT 16 315 ARID Transcription Factor Family AT1G76110 67.1 1.1e-113 407.1
Car01g01565 CCT 16 326 ARID Transcription Factor Family AT1G76110 63.9 2.4e-110 396.0
Car16g01214 . 154 462 ARID Transcription Factor Family AT1G76510 61.0 4.7e-106 382.1
Car06g00146 . 197 513 ARID Transcription Factor Family AT1G76510 56.8 1.3e-95 347.4
Car01g01610 . 5 218 ARID Transcription Factor Family AT1G76510 51.5 3.1e-73 273.1
Car14g01069 CCT,ECH 1 781 ARID Transcription Factor Family AT3G43240 58.3 6.3e-260 894.0
Car01g00013 . 1 778 ARID Transcription Factor Family AT3G43240 58.7 1.0e-257 886.7
Car17g00618 CCT,ECH 2 771 ARID Transcription Factor Family AT3G43240 56.7 4.0e-254 874.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3638 PF01388 ARID 5.40E-11 CL0123 Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00146 Car_Chr06 FPKM 50.195816 55.643734 54.037853 56.178238 48.500172 47.025318 45.79961 103.123276 107.073059 95.138542