Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00162 ATGGCTATGGCTGCTGCAGCTTACACCGTTATAATGACCGTCAAAGCCCACCCTCCTGCTGCTGTTCATTGTTTAGACACTGTTTTCAACGATGATGTTCTTGGGTTGATAGTCTTCAAAGCTGGCCTTCAAGATCCATTGGGTAAACTCATATCATGGAATGAAGAAGATGATACCCCCTGCAATTGGTTTGGTATCAAATGCAATCCTAAAACCAATAGGGTCTCTGAGATTGTTCTTGATGGCTTCTCTTTGTCTGGTCACATCGATCGTGGGCTTCTCAGGTTACAGTTTCTTCAAATACTCTCACTTGCTAACAACAATTTCACTGGCTCAATCAACTCTGCTCTTGCTCATCTTACAAGCTTACAAGTTCTTGATTTGAGTGACAACAGTTTATCAGGATCCATCCCTGAACAGCTCTTCCTGCAATGTGGATCAATAAGAGTCATTTCCTTTGCCAGAAACAATCTCACAGGACAAATCCCACAATCCTTAGCCTCATGCTTTTCTCTAGAGATTCTAAACTTTTCATCAAATCATTTATCTGGGAAATTGCCATCTGGGTTATGGTATTTGAGAGGGATTCAATCACTAGATTTCTCAGACAACTTGCTTGAAGGGCAGATTCCTTCTGGGATTCAAAGTTTATATGATTTGAGATTGGTTAACTTACAGAAGAATCGTTTTTCTGGAAGGGTTCCTGAGGATATTGGTGGCTGTTTGTTTCTGAAATCAATTGATTTTAGTGATAATATCCTTTCTGGGATGCTACCAGAGTCAATGCAGATGCTTAGTTCTTGCAGTTATTTGAATTTACGAGGGAATTCTCTGATGGGTGAAGTTCCTCGTTGGGTTGGAGAGCTTAAAAATCTTGAGATTTTGGATCTTTCTGCTAATAACTTCTCTGGTAAAGTGCCAAGTTCAATAGGAAATCTTCAATTGTTGAAGAAGTTTAATGTTTCTATGAACAATTTTACTGGAAACTTGCCTGAATCCATGGCGGATTGTAAGAATCTCTTGAGTATTGATGCTAGCCATAATCATTTGAATGGGTATCTCCCAGCTAATGTTGGAGAGCTTAGGAACTTGCTGTTGCTGAATTTATCAAGAAACCATCTTGTGGGTTCTATTCCTGGTAGTATTGGTGAGCTGAAATCAGTATATGTTCTTGACTTCAGTGATAATCAATTGAATGGAAGTGTTCCTGTTGAAATTGGAGGAGCTGTCTCACTCAAGGAGTTGTGGCTGGAGAAGAACTTACTCACTGGGGAAATTCCCATCTCCATTGACAAATGCTCGTTGTTAACATCATTGATGGTTTCTCACAACAACCTCACAGGCACAATTCCTGCTGCTCTTGCAAATCTCTCCAACCTTCAAAACGTAGACTTGTCTTTCAACAAACTCACTGGAAGCCTGCCCAAGGAGCTCACTAATCTTTCCCACCTCCTATCCTTTAACATCTCCCACAATCACCTTAATGGAGAGCTCCCAGCTGGGGGCTTCTTCAACACCATATCTCCCTTCTCCATTTCACATAACCCATCTCTTTGCGGTGCTGTCGTCAACCGGTCCTGCCCCTCCGTCCACCCGAAACCAATCGTCCTAAACCCGAACTCCTCCGATACCAACACCAATTCCCCCTCCCACAAGCATCACCATGAGATAATACTAAGCATATCATCCATCATTGCTATTGGTGCAGCTTCTTTTATCTTACTTGGTGTGGTAGCTGTGAGTATCCTTAACATCCGTGCAAGGTCCTCACAGGCACGTTCTGCTGCTCTTGCATTATCTGCTGGGGAGGATTTTAACTGCTCCCCAAAAACTAACCCAGACTATGGAAAGCTAGTCATGTTTTCAGGAGATGCAGAGTTTGTGTTTGGTGCTCAAGCATTGTTGAATAAGGATTGCGAGCTCGGTCGAGGCGGGTTTGGAGTTGTTTACAGAACCGCGCTTCGAGACGGTTGTTTAGTTGCAATCAAGAAGCTAACTGTCACAAGCTTGATCAAGTCCCAAGAGGATTTTGAGAGTGAAGTGAAGAAGCTGGGGCAGATCAGGCATCATAATCTGGTGGCACTTGAAGGGTATTACTGGACAACCTCCTTGCAGCTACTTATCTATGAACATGTCCAAAATGGAAGCTTGTATAAACATCTACACGACCGAACGAGCGACGATTGCTTGTCGTGGCAGCAGAGGTTCAAGATTGTTCTTGGGATGGCCAAAGGGTTGGCTTATTTGCACCAGAATGATATAATTCATTACAATTTGAAGTCGACCAATGTCTTGATAGACAGTTCTGGGACACCAAAAGTGGGGGACTATGGCTTGGCAAGGCTGCTGCCAATGTTGGACCGTTGCATCTTAAGCAGCAAAATCCAAAGTGCTTTGGGCTATATGGCTCCAGAGTTCGCCTGCAAAACAGTAACTATAACCGAGAAATGTGACGTTTATGGGTTTGGCATCTTGGTTTTGGAAGTGGTGACAGGAAAAAGACCTGTGGAGTACATGGAAGATGATGTTATAGTGCTCTGTGATATGGTGAGGGCAGCCTTGGACGATGGCACGGTCGAGCGATGTGTCGATGAGAGGCTTCGATCGAACTTCCGTGTTGAGGAGGCCGTTCCTGTAATGAAACTTGGTTTGATATGTGCTTCTCAAGTGCCATCTAACAGGCCAGATATGAATGAGGTTGTCAATATATTAGAGATGATCCAATCCCCATGTGAAGCTGAGGAGGGCTTGGAATGA 2757 43.45 MAMAAAAYTVIMTVKAHPPAAVHCLDTVFNDDVLGLIVFKAGLQDPLGKLISWNEEDDTPCNWFGIKCNPKTNRVSEIVLDGFSLSGHIDRGLLRLQFLQILSLANNNFTGSINSALAHLTSLQVLDLSDNSLSGSIPEQLFLQCGSIRVISFARNNLTGQIPQSLASCFSLEILNFSSNHLSGKLPSGLWYLRGIQSLDFSDNLLEGQIPSGIQSLYDLRLVNLQKNRFSGRVPEDIGGCLFLKSIDFSDNILSGMLPESMQMLSSCSYLNLRGNSLMGEVPRWVGELKNLEILDLSANNFSGKVPSSIGNLQLLKKFNVSMNNFTGNLPESMADCKNLLSIDASHNHLNGYLPANVGELRNLLLLNLSRNHLVGSIPGSIGELKSVYVLDFSDNQLNGSVPVEIGGAVSLKELWLEKNLLTGEIPISIDKCSLLTSLMVSHNNLTGTIPAALANLSNLQNVDLSFNKLTGSLPKELTNLSHLLSFNISHNHLNGELPAGGFFNTISPFSISHNPSLCGAVVNRSCPSVHPKPIVLNPNSSDTNTNSPSHKHHHEIILSISSIIAIGAASFILLGVVAVSILNIRARSSQARSAALALSAGEDFNCSPKTNPDYGKLVMFSGDAEFVFGAQALLNKDCELGRGGFGVVYRTALRDGCLVAIKKLTVTSLIKSQEDFESEVKKLGQIRHHNLVALEGYYWTTSLQLLIYEHVQNGSLYKHLHDRTSDDCLSWQQRFKIVLGMAKGLAYLHQNDIIHYNLKSTNVLIDSSGTPKVGDYGLARLLPMLDRCILSSKIQSALGYMAPEFACKTVTITEKCDVYGFGILVLEVVTGKRPVEYMEDDVIVLCDMVRAALDDGTVERCVDERLRSNFRVEEAVPVMKLGLICASQVPSNRPDMNEVVNILEMIQSPCEAEEGLE 918
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 982934 987621 + Carg01146-RA Car06g00162 149898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00162 918 ProSiteProfiles Leucine-rich repeat profile. 122 144 IPR001611 GO:0005515
Car06g00162 918 Pfam Leucine Rich Repeat 291 313 IPR001611 GO:0005515
Car06g00162 918 Pfam Protein tyrosine and serine/threonine kinase 637 903 IPR001245 GO:0004672|GO:0006468
Car06g00162 918 Pfam Leucine rich repeat 436 494 IPR001611 GO:0005515
Car06g00162 918 ProSitePatterns Protein kinases ATP-binding region signature. 641 664 IPR017441 GO:0005524
Car06g00162 918 ProSiteProfiles Protein kinase domain profile. 635 907 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g00162 918 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g00162 Car14g00008 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00162 Car-Chr6:982934 Car14g01318 Car-Chr14:11167356 0 dispersed
Car14g00008 Car-Chr14:55752 Car06g00162 Car-Chr6:982934 0 wgd
Car15g00179 Car-Chr15:952707 Car06g00162 Car-Chr6:982934 0 wgd
Car04g00097 Car-Chr4:542736 Car06g00162 Car-Chr6:982934 0 wgd
Car04g00987 Car-Chr4:5691314 Car06g00162 Car-Chr6:982934 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88917 PF07714 PK_Tyr_Ser-Thr 2.20E-42 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00162 - - csv:101222148 1432.16