Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00188 CGGTCAAACAAATTCTCTTTATTGATGAACAACACCGCCCCGCCGGTAGACATGGCCACCGGAACTCCGCCGTGGCTGAACACCGGCGACAACTCTTGGCAGATCACAGCCTCTACTCTGGTCGGACTTCAGAGCATGCCCGGCCTTGTAATTCTCTACGCAAGCATCGTTAAAAAGAAATGGGCTGTGAATTCTGCGTTTATGGCGCTTTACGCCTTCGCCGCCGTTCTAATCTGTTGGGTTTTGGTCGGCTACCGAATGGCCTTCGGCGATCAGCTGATTCCTCTGTGGGGTAAAGGGATTCCAGCTCTGGAGCAAAGTTACCTAATTGACCGAGCCAATATCCCTGAAAGTGGCCATGTAAGCCACGACGGAAGGGTAACGCCGAGAATTGAGCCGAATATTCCGATGGCTTCCCTGGTGTATTTCCAGTTCACCTTTGCTGCGATTACTGTGATTTTACTTGCCGGCTCTGTTCTTGCGAGAATGAACATCAAAGCCTGGATGGCGTTTGTTCCTCTTTGGGTAATTTTCTCCTACACCGTCGGCGCCTACACGATCTGGGGCGGAGGGTTCCTCTTCCAATGGGGCGTGATTGATTACTCCGGCGGCTTTGTTATTCATCTTTCTTCTGGAATTTCTGGCTTAACCGCCGCTTATTGGGTTGGGCCGAGGATTAAAAGCGACAGAGAGAGGTTTCCGCCGAATAATGTGTTGCTGATGTTGGCCGGAGCTGGGATGTTGTGGATGGGGTGGTCGGGATTTAACGGCGGCGCACCGCACTCAGCGAACGTGGTGGCGTCGATTGCGGTGCTGAATACGAACGTAAGCGCAGCGACGAGCCTGCTGGTGTGGACCATCTTGGATGTGTTCTACTTCGGGAAGCCATCAGTGATTGGAGCCATTCAGGGCATGATGACTGGCTTGGCTTGCGTTACCCCCGGCGCAGGAGTTGTGCAGACGTGGGCAGCTATTATAATGGGAGTTATGGGAGGGAGTATTCCATGGGTATCTATGATGATTCTCCATAAAAAGTTGAGTTTCTTGCAAAAGGCTGACGACACGCTTGGCGTATTTCACACGCACGCGGTAGCGGGCATGATGGGCGGGCTTCTAACGGGCCTTTTAGCAGAGCCCACTCTTTGCGAACTATACCTACCGATCCCCGACAGCCGCGGTGCCTTTTACGGCAAAAACGGCGGCGTTCAGTTTCTGAAGCAGCTGGCCGGAGCCATGTTCATAATCGGGTGGAACATCGTCTCCACCACCATTATTCTCCTCTTCATTCGGCTGTTTATGCCGTTGCGGATGCCGGACGAGGAACTCATGATCGGAGACGACGCCGTCCACGGCGAGGAAGCTTATGCCCTGTGGGGCGACGGCGAGAAATTCGATCCCAGAAGGCACGGCAATGCGGCGGCGAATGTGGAAGAAGGAACTTCCCCGCCTTATATCAATGGTGCCAGAGGAGTAACCATCACTTTGTAA 1488 53.43 RSNKFSLLMNNTAPPVDMATGTPPWLNTGDNSWQITASTLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLVGYRMAFGDQLIPLWGKGIPALEQSYLIDRANIPESGHVSHDGRVTPRIEPNIPMASLVYFQFTFAAITVILLAGSVLARMNIKAWMAFVPLWVIFSYTVGAYTIWGGGFLFQWGVIDYSGGFVIHLSSGISGLTAAYWVGPRIKSDRERFPPNNVLLMLAGAGMLWMGWSGFNGGAPHSANVVASIAVLNTNVSAATSLLVWTILDVFYFGKPSVIGAIQGMMTGLACVTPGAGVVQTWAAIIMGVMGGSIPWVSMMILHKKLSFLQKADDTLGVFHTHAVAGMMGGLLTGLLAEPTLCELYLPIPDSRGAFYGKNGGVQFLKQLAGAMFIIGWNIVSTTIILLFIRLFMPLRMPDEELMIGDDAVHGEEAYALWGDGEKFDPRRHGNAAANVEEGTSPPYINGARGVTITL 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1131490 1133662 + Carg01120-RA Car06g00188 149924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00188 495 Pfam Ammonium Transporter Family 33 455 IPR024041 GO:0008519|GO:0016020|GO:0072488
Car06g00188 495 ProSitePatterns Ammonium transporters signature. 200 225 IPR018047 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00188 Car-Chr6:1131490 Car08g00916 Car-Chr8:6158119 2.14E-22 dispersed
Car03g00596 Car-Chr3:5586671 Car06g00188 Car-Chr6:1131490 9.02E-178 transposed
Car05g00341 Car-Chr5:1964897 Car06g00188 Car-Chr6:1131490 0 transposed
Car14g00033 Car-Chr14:203181 Car06g00188 Car-Chr6:1131490 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00188 K03320 - csv:101207321 884.404