Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00189 ATGGATATGGATATCGACGAAAATTCGACAGCCAAAGGAAATGAACGGCGAACGAAGCTCATAATGGTGATATTAGTGGGCGCACCTGGAAGCGGAAAGTCCACCTTCTGCGAACTCGTAATGGCTTCCTCTTCTCGCCCTTGGGTTCGAATCTGCCAGGATACCATTGGAAATGGCAAGTCCGGAACCAAAGCACAGTGTCTGAAGAGTGCAGCCAGTGCATTGAATGATGGAAAGAGTGTATTTGTGGACAGATGCAATCTTGAAATAGAGCAGCGTTCTGAGTTTGTGAAACTAGGTAGCTCTCTAGTGGATGTACATGCTGTTGTATTGGATCTTCCTGCACAGCTCTGTATCTCCCGTTCGGTTAAGCGGACCGGTCATGAAGGGAACCTATCAGGTGGAAAAGCTGCTGCTGTTGTGAATAAAATGCTGCAAAAGAAAGAATTGCCGAACCTGAATGAAGGGTTCAAGCGTATAACATTTTGTCACAGTGAAACGGACGTTCAATCCGCCATAGATACGTATAAATCACTTGGTTTACATGATGCACTTCCAGATGGATGTTTTGGACAGAAGAATGCAGACAAGAAAGTACAATTAGGCATAATGAGGTTCTTAAAGAAAGCAGAAAATCCTGCTAAAACATGTTCTAATGCCAATACCAATAAGGATTTTCCAAGTTCTCAAACTACCCAGGAAAAGAAAGAGTCTTCCTGCACGATGTTGAGCAATGTCAATAAAGAGTCGGAGAAAGGCGAAAATCCAGGCGTTGGATCCTTAGAAAACAATATTTCTGGAAGTGATCCTCCAACTCTTGCATTTCCTTCTATTTCAACATCGGATTTCAAGTTCAGCCATGAAAAGGCTGCTGAAATTATTGTTGAGATGGTGGAGGAATTCATGGATAAGCTTGGGAATGCCAGACTTGTTATGGTAGACTTAAGTCATGGATCAAAGATTTTGTCTTTGGTTAAAGCTAAAGCGGCCAAGAAAAATATTTGTTCCACCAAGTTTTTTACATTTGTAGGTGATATAACTAAACTCAAGTCAGATGGTGGATTGCACTGCAATGTAATAGCCAATGCTGCAAACTGGCGATTGAAACCAGGAGGGGGTGGTGTCAATGCTGCAATTTTTAGTGCTGCAGGTCCCAGTCTGGAAGAGGCAACAAAACAACAAGCCAAGTCCCTTCGACCTGGCAATGTTGTGGCCGTTCAATTGCCTTCAACTTCTCCTTTGTTTAATAGGGAAGGAGTAACCCATGTCATACATGTTCTTGGACCAAACATGAATCCTCAAAGACCAAATTATCTCAACAATGATTATGATGAAGGTTGCAAGCTTCTTCGTGATGCTTATTCTTCTCTATTTCAAGCCTTTATTTCAATAGTAAAAGATGAGTTTAAGTCGGCGAAGGGAATTGACGAACGCCTCGGCTCAGCACCTTCAGAATCACGAAAACACTCTGAGGACACCCATCACAAGTTTAAGAGAGCGGAGTTGCAAATTCCTGAAAGAAGCAAAAAGTGGAAAGGAACTCAGGAATCAGCTGAAGCATTAAACCAAAACAACAATAAGATTTCCCACAAGATGAGTAAGCACTGGGGCTCATGGGCACAAGCACTTTACAACACTGCAATGTATCCCGAGAGACATGCCAATATTGTACTGGAGACATCAGATGATGTTGTAGTACTGAATGATATTTATCCAAAAGCACGCAAGCATCTTCTGATAGTGGCTCGATATGAAGGCCTCGATCAACTAGCTGATGTACATAAAGAACACCTTCCACTGTTGAAAACGATGCACGCCGTGGGTATGAAGTGGATTGATAAGTTCATTCATGACGATGCATCGTTGGTTTTTCGCCTCGGATACCACTCGGCTCCATCCATGAGGCAACTGCACCTACATGTTATAAGCCAAGATTTTGACTCCAGTCATCTGAAGAACAAGAAGCATTGGAATTCTTTCAACACCGATTTCTTCCGAGACTCGGTCGACGTTATAGACGAAGTCAGTAGCCATGGAAAGGCAATCATCAAGGACGACGAGAGCTTGATGTCTATGGAGTTTCGTTGCAACAGATGCAGAAGTGCCCATCCCAACTTACCCAAGCTGAAAACACATATTTCCAAATGCCAATCGCCTTTCCCTTCCACGCTACTCGAGGGCGGTCGTTTAGTGAATGCTTCAGGTAATTCTCGTAACTTTCTTTCGTAG 2229 43.07 MDMDIDENSTAKGNERRTKLIMVILVGAPGSGKSTFCELVMASSSRPWVRICQDTIGNGKSGTKAQCLKSAASALNDGKSVFVDRCNLEIEQRSEFVKLGSSLVDVHAVVLDLPAQLCISRSVKRTGHEGNLSGGKAAAVVNKMLQKKELPNLNEGFKRITFCHSETDVQSAIDTYKSLGLHDALPDGCFGQKNADKKVQLGIMRFLKKAENPAKTCSNANTNKDFPSSQTTQEKKESSCTMLSNVNKESEKGENPGVGSLENNISGSDPPTLAFPSISTSDFKFSHEKAAEIIVEMVEEFMDKLGNARLVMVDLSHGSKILSLVKAKAAKKNICSTKFFTFVGDITKLKSDGGLHCNVIANAANWRLKPGGGGVNAAIFSAAGPSLEEATKQQAKSLRPGNVVAVQLPSTSPLFNREGVTHVIHVLGPNMNPQRPNYLNNDYDEGCKLLRDAYSSLFQAFISIVKDEFKSAKGIDERLGSAPSESRKHSEDTHHKFKRAELQIPERSKKWKGTQESAEALNQNNNKISHKMSKHWGSWAQALYNTAMYPERHANIVLETSDDVVVLNDIYPKARKHLLIVARYEGLDQLADVHKEHLPLLKTMHAVGMKWIDKFIHDDASLVFRLGYHSAPSMRQLHLHVISQDFDSSHLKNKKHWNSFNTDFFRDSVDVIDEVSSHGKAIIKDDESLMSMEFRCNRCRSAHPNLPKLKTHISKCQSPFPSTLLEGGRLVNASGNSRNFLS 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1134287 1138103 + Carg01119-RA Car06g00189 149925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00189 742 SUPERFAMILY HIT-like 527 700 IPR036265 -
Car06g00189 742 Pfam C2HE / C2H2 / C2HC zinc-binding finger 661 715 IPR032566 -
Car06g00189 742 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 165 IPR027417 -
Car06g00189 742 Pfam AAA domain 22 144 - -
Car06g00189 742 ProSiteProfiles Macro domain profile. 326 579 IPR002589 -
Car06g00189 742 Gene3D Leucine Aminopeptidase, subunit E, domain 1 262 330 IPR043472 -
Car06g00189 742 Gene3D - 4 178 IPR027417 -
Car06g00189 742 MobiDBLite consensus disorder prediction 217 269 - -
Car06g00189 742 MobiDBLite consensus disorder prediction 477 496 - -
Car06g00189 742 PANTHER APRATAXIN 20 735 IPR026963 GO:0003677|GO:0006281|GO:0033699
Car06g00189 742 ProSiteProfiles HIT domain profile. 543 651 IPR011146 GO:0003824
Car06g00189 742 ProSitePatterns HIT domain signature. 625 643 IPR019808 -
Car06g00189 742 PANTHER APRATAXIN-RELATED 20 735 - -
Car06g00189 742 Gene3D Leucine Aminopeptidase, subunit E, domain 1 331 472 IPR043472 -
Car06g00189 742 Gene3D - 538 719 IPR036265 -
Car06g00189 742 SMART YBR022w_8 338 512 IPR002589 -
Car06g00189 742 Pfam Macro domain 361 445 IPR002589 -
Car06g00189 742 SUPERFAMILY Macro domain-like 320 459 IPR043472 -
Car06g00189 742 Pfam Scavenger mRNA decapping enzyme C-term binding 545 656 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00189 K10863 - csv:101216867 1226.85