Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00201 ATGGAAATGCCATCCACCACTCCCAAAACCGTCGAGGAAATTTTCAAAGATTACGCCGGTCGCCGTGCCGCTCTTGTTCGCGCCCTCGCTCACGATGTGGATGAATTTTACGGCCTTTGTAATCCAGATAAGGAAAATTTGTGTCTGTATGGACATCCCAATGAAACATGGGAAGTGGTTCTTCCAGTCGAAGAGGTTCCACCGGAGCTTCCTGAGCCTGCACTTGGAATAAATTTTGCAAGGGATGGCATGAACAGAAAAGATTGGCTGTCTCTAGTGGCTGTACATAGTGATTCCTGGTTGCTCTCGGTGGCTTTCTATCTTGGATCGAGGCTTAAGCAAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTGTGACAGAATGGAAGCCTGTCAAAGAGAAACCTAGTGTAGATAGTGGAAGCAGATCACAAGGAAGCGCTAAGAGATCCAATGATGGGCAGGTGAAAAGCAATCCTAAACTTGCCAAACAGAGTATCGAGGAGGATGTCGACGAACATAGCAAAACCCTCTGTGGTAGCTGTGGTGAAAACAGTACAGATGAGTTCTGGATTGGCTGTGACATATGCGAAAGGTGGTACCACGGAAAGTGCGTAAACATAACACCTGCTAAGGCTGATTGTATCCAACGATACAAATGTTCATTTTGCTGCATGAAGAAATGCAGGCAGTAG 720 45.56 MEMPSTTPKTVEEIFKDYAGRRAALVRALAHDVDEFYGLCNPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGSRLKQNERKRLFSLMNDLPTVFEVVTEWKPVKEKPSVDSGSRSQGSAKRSNDGQVKSNPKLAKQSIEEDVDEHSKTLCGSCGENSTDEFWIGCDICERWYHGKCVNITPAKADCIQRYKCSFCCMKKCRQ 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1192735 1195177 - Carg01107-RA Car06g00201 149937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00201 239 MobiDBLite consensus disorder prediction 142 177 - -
Car06g00201 239 ProSiteProfiles Zinc finger PHD-type profile. 184 235 IPR019787 -
Car06g00201 239 Pfam PHD-finger 187 233 IPR019787 -
Car06g00201 239 Pfam Alfin 10 135 IPR021998 GO:0006355|GO:0042393
Car06g00201 239 MobiDBLite consensus disorder prediction 146 170 - -
Car06g00201 239 ProSitePatterns Zinc finger PHD-type signature. 187 232 IPR019786 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g00201 Car14g00046 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00201 Car-Chr6:1192735 Car17g00661 Car-Chr17:6128488 2.58E-89 dispersed
Car14g00046 Car-Chr14:276804 Car06g00201 Car-Chr6:1192735 2.55E-95 wgd
Car04g00146 Car-Chr4:800314 Car06g00201 Car-Chr6:1192735 1.79E-113 wgd
Car04g01040 Car-Chr4:5967203 Car06g00201 Car-Chr6:1192735 6.35E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3643 PF12165 Alfin 1.70E-65 No_clan Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00201 - - csv:101211970 428.713