Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00206 ATGGGGAACACTCGCAGCAATGTGAAGCGGATTCTGTGTATATTTTTGTATAATATCTTTCAGATGTCTATGATATCAGGTTTGGCAAAATACACACCAACCTCTGGAAATGAATCGGATCGCTTGGCTCTACTTGACTTCAAAAGTAAAGTATTCAACGACCCACTTGGAATCATGAGTGCTTGGAACGATTCCATGCATTTTTGCGATTGGGTTGGCGTTTCTTGCGATCAAAGCATCAGAAGAGTAGTGGGTTTGAGCTTGGAAGCTCGAAAGCTGAGTGGTTCGATACCACCTTCTCTGGGTAATCTTACTTATCTCACTGAAATCAGATTGGGAGACAACAACTTGCATGGCCAAATTCCCCAAGAGTTTGGTCGACTGCTACGATTGCGTCATCTCAATTTGTCTTTTAATAACTTCAGTGGTGAGATTCCAGTGAATATAAGTCATTGCACTGAGCTGGTTGTTCTGACAATTGGTGCCAATAGGCTTGAAGGTCAAATTCCATCTCAATTCTTCACGTTAACCAAGTTGGAGCTTCTCGGGTTTGGTGTCAACAATTTGACTGGAACTATCCCACCTTGGATAGGTAATTTTTCTTCAATGCTTCGTTTGTCATTCGCCAAGAACAACTTTCGAGGAGACATTCCCAATGGAGTTGGACGTCTGCATAGATTGAAATTCTTCACAGTTTATGGAAACTACTTCACAGGGTCAGTGCCGCTTTCAATCTATAATATAACTTCTTTGAATTATTTTTCTGTTACTCAGAATCGATTGCAAGTCCTAGTACCACCAAATAATGGATTTTCTCTTCCCAATCTTCAGATCTTTTATGGTGCTATCAACAATTTCAACGGGCCTATTCCCACGTTTTTTGCGAATGCCTCAAGTCTTCAAGAAATAGATCTTTCTGAGAATAATTTCACTGGTAAAATACCTGAGGACTTGGGGAACTTAAACGACTTGGTGTTACTAAATTTTGATGACAATAGACTTGGAACTGGGAAAGTTGGCGACTTAAGTTTTATCAGTTCCTTGACTAATTGTACCAGTCTAAGCATACTGGGTGCTGCTGGGAATCATTTTGGTGGAGTATTGCCTCCATCTATTACCAACTTGTCAGACCAATTCACAAGCCTAACCTTAGGTGAAAATATGTTAAGTGGAGGCCTTCCAGTAGGGATTGAAAACTTGATTAACTTGCAGGTTTTCACTGTGGAAAATAACTACTTGAATGGTAGTGTCCCTCTCAATGTTGGTAAGCTTCAAAACTTGGCCAAATTGTATTTGCAAGGTAACAAACTAAGTGGGCCAATTCCATCATCCATTGGTAACTTGTCCTTGATCATCGAGCTTCGTTTGAATGATAACGAACTTGATGGAAGTATACCACCAAGCTTAGGACGATGCAAAAGACTTCAAGCTCTTGACCTATCTAATAATAAGCTAAGTGGTACCATACCCGAGGAAGTTCTCAGTCTCCCTTCCCTTTCACTCTTTTTGACCTTGGCTCAGAACTCACTTACTGGTCCATTACCAGCTCAAGTGGGAGAATTAATTAGTTTATCTGAGTTGGATCTGTCAGAGAACATGTTATCAGGAAATATTCCCGAAGACCTTGGTAAATGTATTGGCCTGATTCATTTGTTTTTGGATCATAACCTATTTGAGGGAACAATTCCTCAATCTTTGGAAGCTTTGAAAGGTCTAGAAGCACTTGATCTTTCAAGCAACAACTTGTCTGGGCCAATTCCCCAATTTCTTGACCAGTTTCTCTCACTCAAGTATCTCAATCTATCCTATAATGACCTATGTGGTGGTTTGCAACACTTGCATTTACCTCCATGCATGCCTAACCCAACACATTCATCCAACAAGTTTCTGACAAAAAAAGTGTTAGCCTGTACAATATCTACAGTCACATCTGCCATTATTATTTTGAGCATCCTTCTTGTGTGTTTAATGCTTAAGAAGTCGAGGAAGAATGCTTTGAATTCATCTTCCAACTCCAAGGATTTTGTATTGCAAGTTTCTTACTTACAACTCAGTAGATCAACTAATGGGTTCTCTAGAGACAATTTGATTGGTTCAGGTAGTTTTGGTTCTGTGTATAAAGGTTCTCTGTCAAATGATGGATTGATTGTTGCAATCAAAGTTGTAAACCTCCAACAAGAAGGTGCTTCCAAAAGTTTTGTTGATGAATGCAAAACTCTCGCAAATATACGACATCGAAATCTACTAAAGATCATAACTTCTGTCTCGAGCATCGATGGACAAGGCAATGAGTTTAAAGCTCTAGTTTTCGATTTCATGTCGAACGGTAACCTGGATCATTGGCTTCACCCTACAAATCAAGGGGAGAATCAAAGAAGGCTGAGTCTTATCCAGAGACTGAATATTGCCATTGATATTGCTTGTGCATTAGATTATCTTCACAATCATTGCGAAACACCTATTGTTCACTGTGATCTAAAGCCTAGCAATGTATTGCTGGACGATGATATGGTAGCCCATGTAGGGGACTTTGGTTTAGCAAGGTTCATGTTGGAAGGCTCAAATGATCAATCATCTTTCAGCCAAACCATGTCACTTGCGCTTAAGGGGTCGATCGGGTATATCCCTCCAGAGTATGCCACTGGTGGTAGAGTTTCCAGTGAAGGAGATATTTTCAGCTACGGAATACTACTATTGGAGATGATCATTGGAAAAAGACCCACAGACAGCACGTTTCACAGTGGCGTAGATATTCACATGTTCACTTCAATGGCATTGTCTCCTGGAGCGTTGGCCATAATTGACCCTTATTTGCTATATGAAGAAAGACGTTGTCAAGAAGAAGAGAAGGAAGACAGAATACAAGAAATAGCAATAATGATGGGTGAAGATAATCATGGTAGAGAAACTGTACCAAGATGGATGGAGGAATGTGTAGTTTCAATAATGAGAATTGGGTTATCATGCTCTTCAACTGTGCCTCGAGAAAGAACGTCCATGAATATGGTTGTTGACGAATTGCAGAAAATAAGAAGCTCCTATCTCAAGTTTAAGAAGGCACAAACACAAGGATCAGTCGATATTTGTTCCCCCAACCTTGAGAGACGGAATGATTGTGTTTTGGCCGCAATGGGTTCCTGA 3141 40.18 MGNTRSNVKRILCIFLYNIFQMSMISGLAKYTPTSGNESDRLALLDFKSKVFNDPLGIMSAWNDSMHFCDWVGVSCDQSIRRVVGLSLEARKLSGSIPPSLGNLTYLTEIRLGDNNLHGQIPQEFGRLLRLRHLNLSFNNFSGEIPVNISHCTELVVLTIGANRLEGQIPSQFFTLTKLELLGFGVNNLTGTIPPWIGNFSSMLRLSFAKNNFRGDIPNGVGRLHRLKFFTVYGNYFTGSVPLSIYNITSLNYFSVTQNRLQVLVPPNNGFSLPNLQIFYGAINNFNGPIPTFFANASSLQEIDLSENNFTGKIPEDLGNLNDLVLLNFDDNRLGTGKVGDLSFISSLTNCTSLSILGAAGNHFGGVLPPSITNLSDQFTSLTLGENMLSGGLPVGIENLINLQVFTVENNYLNGSVPLNVGKLQNLAKLYLQGNKLSGPIPSSIGNLSLIIELRLNDNELDGSIPPSLGRCKRLQALDLSNNKLSGTIPEEVLSLPSLSLFLTLAQNSLTGPLPAQVGELISLSELDLSENMLSGNIPEDLGKCIGLIHLFLDHNLFEGTIPQSLEALKGLEALDLSSNNLSGPIPQFLDQFLSLKYLNLSYNDLCGGLQHLHLPPCMPNPTHSSNKFLTKKVLACTISTVTSAIIILSILLVCLMLKKSRKNALNSSSNSKDFVLQVSYLQLSRSTNGFSRDNLIGSGSFGSVYKGSLSNDGLIVAIKVVNLQQEGASKSFVDECKTLANIRHRNLLKIITSVSSIDGQGNEFKALVFDFMSNGNLDHWLHPTNQGENQRRLSLIQRLNIAIDIACALDYLHNHCETPIVHCDLKPSNVLLDDDMVAHVGDFGLARFMLEGSNDQSSFSQTMSLALKGSIGYIPPEYATGGRVSSEGDIFSYGILLLEMIIGKRPTDSTFHSGVDIHMFTSMALSPGALAIIDPYLLYEERRCQEEEKEDRIQEIAIMMGEDNHGRETVPRWMEECVVSIMRIGLSCSSTVPRERTSMNMVVDELQKIRSSYLKFKKAQTQGSVDICSPNLERRNDCVLAAMGS 1046
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1209477 1212693 - Carg01102-RA Car06g00206 149942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00206 1046 Pfam Protein kinase domain 692 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g00206 1046 ProSitePatterns Serine/Threonine protein kinases active-site signature. 821 833 IPR008271 GO:0004672|GO:0006468
Car06g00206 1046 Pfam Leucine rich repeat 549 606 IPR001611 GO:0005515
Car06g00206 1046 Pfam Leucine rich repeat 426 485 IPR001611 GO:0005515
Car06g00206 1046 ProSitePatterns Protein kinases ATP-binding region signature. 697 720 IPR017441 GO:0005524
Car06g00206 1046 Pfam Leucine rich repeat N-terminal domain 38 77 IPR013210 -
Car06g00206 1046 Pfam Leucine Rich Repeat 299 321 IPR001611 GO:0005515
Car06g00206 1046 Pfam Leucine Rich Repeat 130 152 IPR001611 GO:0005515
Car06g00206 1046 ProSiteProfiles Protein kinase domain profile. 691 1015 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00206 Car-Chr6:1209477 Car10g00416 Car-Chr10:2087434 6.22E-166 dispersed
Car14g00056 Car-Chr14:316810 Car06g00206 Car-Chr6:1209477 5.68E-28 wgd
Car15g00143 Car-Chr15:782208 Car06g00206 Car-Chr6:1209477 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88922 PF00069 Pkinase 1.50E-40 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00206 - - cpep:111800314 1824.29