Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car06g00229 | ATGGCGCCTCCACAAGTTTCCCAGTCCGACATTGATTTGGAGCAAGGGGATCATCGGCGGTCTGTTAGTGGTAGTGAGTTGAGCGCCGATTGTAGCGTTTATTTCTCTGACGCCGATGAGGGTTCGTGTTATTCCCAGTTTTATTCCACCAACGGTGGTTCTTACGATGAGTATAGGTTTGCTTTCGTTTCTCAGCCGGGGGTTGGGGTGGTTGTTTCGGATTCCCGGCGGCTTTCATCGGCTTCGGATCGTTCCGTCGAGGTTGAAAATGAGAATGGGATTACTGAAATTAAGGTGCATTTAGGTAAGGTTGAGAGGGATTGCAGGATTTGTCATCTGGGTTTGGAGAGTAATAGCCAAGAATCTGGAATCCCAATCGAATTGGGTTGTTCTTGCAAGGATGATCTGGCTGCGGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATCAAAGGCAATAAGACGTGTGAGATTTGTCATTCCGTTGCACGAAACATTCTGGGACCAAATGAAGTTGAGTCAACAGAGCAGTCTAATGAATCCAACAACGCCTCCTCAACAACTGCAGTTGCTGCTGCATCAATTCCCTCATCAGATAGCCCAAGCTTCTGGCGTGGCCATCGGTTTCTGAACTTTCTACTTGCTTGTATGGTTTTTGCATTTGTTATATCTTGGCTCTTTCACTTCAACGTGCCCTCATAA | 702 | 46.87 | MAPPQVSQSDIDLEQGDHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRFAFVSQPGVGVVVSDSRRLSSASDRSVEVENENGITEIKVHLGKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPNEVESTEQSNESNNASSTTAVAAASIPSSDSPSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS | 233 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 1328421 | 1330821 | + | Carg01079-RA | Car06g00229 | 149965 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car06g00229 | 233 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Car06g00229 | 233 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 100 | 166 | IPR011016 | GO:0008270 | |
| Car06g00229 | 233 | Pfam | RING-variant domain | 108 | 159 | IPR011016 | GO:0008270 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car06g00229 | Car07g01016 | CCT | |
| Car06g00229 | Car07g01016 | ECH | |
| Car06g00229 | Car14g00080 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car02g00704 | Car-Chr2:5212727 | Car06g00229 | Car-Chr6:1328421 | 1.42E-11 | dispersed | |
| Car03g01194 | Car-Chr3:9405167 | Car06g00229 | Car-Chr6:1328421 | 3.46E-30 | dispersed | |
| Car06g00229 | Car-Chr6:1328421 | Car07g00149 | Car-Chr7:886151 | 9.08E-32 | dispersed | |
| Car17g00556 | Car-Chr17:5202220 | Car06g00229 | Car-Chr6:1328421 | 2.30E-12 | dispersed | |
| Car13g00066 | Car-Chr13:525705 | Car06g00229 | Car-Chr6:1328421 | 6.66E-50 | wgd | |
| Car14g00080 | Car-Chr14:428421 | Car06g00229 | Car-Chr6:1328421 | 1.18E-141 | wgd | |
| Car15g00128 | Car-Chr15:717305 | Car06g00229 | Car-Chr6:1328421 | 9.54E-51 | wgd | |
| Car06g00229 | Car-Chr6:1328421 | Car07g01016 | Car-Chr7:5858833 | 3.71E-62 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car06g00229 | - | - | csv:101218915 | 382.489 |