Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00239 ATGGCTGACGGCATTGAATCCTTCGACCATGTCCCTCAACAGAGCCGCCGTGATAAGCTCCGAGAACAACCCGACCGCTCCTCTTTCCTCCCTTTTTACGACCCCTCATTAATTTCCTCCTCCGACATCCTCTCCACCGCCGCCGCCTTCCAATTCCACCACTCCTTCTTCGACACACAAATCCCCTCTTCCCTCTTGCCCGATTCCAACAACTCTGTTCTCTTAAACCATTGCTACGCCGCCTTCAAGCCCGAACCCCTCTCTTTATCACTCTCCTCTCACCCCTATCTGAGTACTGTTAATGTTCCTCTTGGACATTTCACTGGGTACGCTTCCATTTTGAAAGGGTCGAGGTTTTTGAAGCCTGCCCAGCAGTTGTTGGAGGAGCTCTGTGATGTTGTTGGCCTTCAACGGACTCGATCCTCTTCGGCCACTTCCGACAGTTTGAGTGACTGTGGAGTTGTTCATCATTCCCTTGCTTCTAACAAATCTACCCTTGTTTCCATGCTCGACGAGGTTTACCGAAAGTATAAGCAATACTATCAACAAATCGAGGAAGTGATGACATCGTTCGAGTACATCTCCGGGCTCGGGAATGCAGCGCCCTATGCCAACCAAGCTATAAAAGCCATGTACAAGCATTTCCAAAGCTTGAAAAATGCTATTCTTGACCAACTTAAATTCAATAAAAGGACTCGTGTTGGTGACTACAGTCAAAGATCGGTTCAAAACCCGGGATTTCTCGACCATCAGCCTGTTTGGCGACCACAACGAGGACTACCCGAACAAGCAGTGATGGTTCTTCGTGGTTGGCTGTTCGATCATTTTTTGCATCCTTATCCTTCTGATACCGACAAGCTTATGTTGGCTAAACAGACTGGTCTGTCTCGTAGTCAGGTCTCTAACTGGTTCATTAATGCAAGAGTGAGGCTTTGGAAGCCATTGGTTGAAGAAATATACAATCTTGAAACAAAGCAAACACAGAAGAATTGCCATAGAGAAGAAGATCGAAACGAGCATCCTCCATCGCGAAACGAACCTCATGACGTACCAATGGGGATTCAAGATGAGCCCTTTAACATATGTTACAACTTGTCAAGCCATCCCCATATGGCGAGCAACAACAACAACGGCGGAGTTTCCTTAACTCTTGGCCTTCACCAGAACAATGGCATTGGCGGCTTCCCTGTTGGGTACGTAATGGGTGGACATTTTGGTAGAGATGTTGTTGGAACTCAGCTGTTACATGACTTTGTAGGCTGA 1263 47.35 MADGIESFDHVPQQSRRDKLREQPDRSSFLPFYDPSLISSSDILSTAAAFQFHHSFFDTQIPSSLLPDSNNSVLLNHCYAAFKPEPLSLSLSSHPYLSTVNVPLGHFTGYASILKGSRFLKPAQQLLEELCDVVGLQRTRSSSATSDSLSDCGVVHHSLASNKSTLVSMLDEVYRKYKQYYQQIEEVMTSFEYISGLGNAAPYANQAIKAMYKHFQSLKNAILDQLKFNKRTRVGDYSQRSVQNPGFLDHQPVWRPQRGLPEQAVMVLRGWLFDHFLHPYPSDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPLVEEIYNLETKQTQKNCHREEDRNEHPPSRNEPHDVPMGIQDEPFNICYNLSSHPHMASNNNNGGVSLTLGLHQNNGIGGFPVGYVMGGHFGRDVVGTQLLHDFVG 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1364836 1367631 + Carg01069-RA Car06g00239 149975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00239 420 MobiDBLite consensus disorder prediction 10 25 - -
Car06g00239 420 MobiDBLite consensus disorder prediction 326 351 - -
Car06g00239 420 MobiDBLite consensus disorder prediction 1 27 - -
Car06g00239 420 MobiDBLite consensus disorder prediction 327 346 - -
Car06g00239 420 Pfam Homeobox KN domain 271 310 IPR008422 GO:0003677|GO:0006355
Car06g00239 420 Pfam Associated with HOX 113 222 IPR006563 -
Car06g00239 420 ProSiteProfiles 'Homeobox' domain profile. 251 314 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g00239 Car07g01000 CCT
Car03g00349 Car06g00239 CCT
Car03g00349 Car06g00239 ECH
Car06g00239 Car07g01000 ECH
Car06g00239 Car14g00087 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00239 Car-Chr6:1364836 Car01g00458 Car-Chr1:2663523 2.66E-70 dispersed
Car14g00087 Car-Chr14:459051 Car06g00239 Car-Chr6:1364836 0 wgd
Car03g00349 Car-Chr3:4418841 Car06g00239 Car-Chr6:1364836 1.39E-68 wgd
Car06g00239 Car-Chr6:1364836 Car07g01000 Car-Chr7:5698858 3.25E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3645 PF07526 POX 9.40E-29 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00239 - - cmax:111470021 768.074