Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00263 ATGAATTTTTCATCCATTCCTCCTTATCTTCATCCTTCTAATTGGCAACAGCAAGTTTCCCATCAACTTGGTACTACTACTACTACTACTACTACCTCTGCACCCACTTCTCAGCTTCCTCCTCCTCCTCCTCCGCCTCCTCCACCACCTCATGGCGGTTCCATCCGGCCCGGTTCCATGGCGGAGCGAGCTCGATTGGCTAATATTCCCATGCCTGATGCTACATTGAAGTGCCCAAGATGTGAATCAACCAACACTAAGTTTTGTTACTTCAACAATTATAGCCTAACTCAGCCTCGCCACTTTTGCAAGACTTGCCGACGGTACTGGACGAGAGGTGGCGCTCTGAGGAACGTCCCGGTCGGGGGCGGTTGTCGGAGGAATAAAAGAAGTAAAGGGAGAAATTCTAAATCGCCGCCGGTTAGTTCTGACCGGCAACAACAAACTAGCGGTTCAGCTAATTCCTCATCAAGTGCAATAGCTTCCAATAATAATAGTGGACTTTCCCCACAGATCCCACCACTCCGCTTCATGGCTCCTCTCCACCACCACCAACAACTCACTGACTTCGACATCGGCGGCTTCAACTACGGCGGCGGCGGCGTACTCTCAGCTCCTGCCACCGCCGCCGCCGCCGCCGGCGACTTGAGTTTCCAATTGGGTAACACTAATTTAGCTGGAGGAACAAGTATAGGATCTCTCTTGGGATTTGACCAACAATGGCGGCTCCAACAACAAGCTCCCCAATTTCCCTTCTTGTCGAGCCTCGACCCTTTTGACGGCGGTAGTAGCGGCGGCGGCGGCGATGGGTCGGGGTGGCAAATGAGGCCAAAATTACCCTCAGGATCAAGGAATTTAACCCAAATGGGAAATTCAGTGAAAATGGAAGGAACCCCAAATCATGAAGCTAACATTGGAAGGCAATTTGTTGGGAATGAACAATATTGGAGCGGTGGATCAATGGCGTGGTCGGATCTTTCTGGCTTCAGTTCTTCATCTTCAACAAGAAACCCATTATAG 1020 50.59 MNFSSIPPYLHPSNWQQQVSHQLGTTTTTTTTSAPTSQLPPPPPPPPPPPHGGSIRPGSMAERARLANIPMPDATLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGRNSKSPPVSSDRQQQTSGSANSSSSAIASNNNSGLSPQIPPLRFMAPLHHHQQLTDFDIGGFNYGGGGVLSAPATAAAAAGDLSFQLGNTNLAGGTSIGSLLGFDQQWRLQQQAPQFPFLSSLDPFDGGSSGGGGDGSGWQMRPKLPSGSRNLTQMGNSVKMEGTPNHEANIGRQFVGNEQYWSGGSMAWSDLSGFSSSSSTRNPL 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1493595 1494709 + Carg01045-RA Car06g00263 149999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00263 339 MobiDBLite consensus disorder prediction 135 171 - -
Car06g00263 339 MobiDBLite consensus disorder prediction 1 35 - -
Car06g00263 339 MobiDBLite consensus disorder prediction 117 174 - -
Car06g00263 339 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
Car06g00263 339 MobiDBLite consensus disorder prediction 254 290 - -
Car06g00263 339 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
Car06g00263 339 Pfam Dof domain, zinc finger 74 130 IPR003851 GO:0003677|GO:0006355
Car06g00263 339 MobiDBLite consensus disorder prediction 1 58 - -
Car06g00263 339 MobiDBLite consensus disorder prediction 36 54 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car03g00379 Car06g00263 CCT
Car03g00379 Car06g00263 ECH
Car06g00263 Car14g00128 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00711 Car-Chr7:3662746 Car06g00263 Car-Chr6:1493595 1.80E-32 dispersed
Car01g00540 Car-Chr1:3203824 Car06g00263 Car-Chr6:1493595 6.04E-54 wgd
Car13g00103 Car-Chr13:742863 Car06g00263 Car-Chr6:1493595 9.12E-51 wgd
Car14g00128 Car-Chr14:617199 Car06g00263 Car-Chr6:1493595 2.22E-142 wgd
Car15g00373 Car-Chr15:1950676 Car06g00263 Car-Chr6:1493595 1.43E-48 wgd
Car02g00587 Car-Chr2:4460372 Car06g00263 Car-Chr6:1493595 5.28E-42 wgd
Car20g00359 Car-Chr20:2020738 Car06g00263 Car-Chr6:1493595 1.73E-44 wgd
Car03g00379 Car-Chr3:4584565 Car06g00263 Car-Chr6:1493595 1.46E-44 wgd
Car04g00201 Car-Chr4:1109912 Car06g00263 Car-Chr6:1493595 7.76E-47 wgd
Car04g01092 Car-Chr4:6300012 Car06g00263 Car-Chr6:1493595 3.63E-50 wgd
Car06g00263 Car-Chr6:1493595 Car07g00965 Car-Chr7:5466298 9.50E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3648 PF02701 zf-Dof 3.70E-32 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00263 - - cpep:111791192 445.277