Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00270 ATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTGCAAATAAGCCGCTGGAGAAAGAGAGCGCTTCGAGTACCGAATTGAAGCGTGACCATCAGTATCTCGATGAAGATACGGAACCTGAGTCGTTTCACAATAAGAAGCAGGCAAAAGAAGTGTCGAATGAAGACGTTCGTTCAGAAGTTTCTAATCCTGTAATTTCTCCGAAAGGGAATCATTTCCAAGATATTACCAGTCAGCCAGACGAGCAAGAAAATACCAACCAAGTTGAGCGTGGGGACCTTACGTCGGCTTGTTCGGGAAATTCAAGCTCAGAGGATACTTCAAGCGATGGAGTTCGTTGCCAGAACAACATGTCTCGGAATGATGTTGATGTGTGTGATGATGATGAAGTCTCCCGGGTTGTGATTGAAATTCCTAAGCATGCTAGTTCAACTGGAATTAAGAAAATTACGTTCAAATTCAGCAAAAAAAAGGACAACAATGACGCATCCAGATCAGCTGACAAAGTTCATTCTTATGGAAACTCTGACAAGGACTGTAAACCAGAACCATCCTCGGTTGACGATGCTTATACGGAGACATCTGCACATAGCTGGGAAGGCTGTGCTGAGAGCAGCAGGTTTCCTCCAGGCCCCAGTAAAATGGAACTGAAAATGTCGAAGAAGGTTTTGCCAAACAATTACCCGTCAAATGTGAAAAAGCTGCTGTCGACTGGTATACTTGACGGAGCTCGCGTCAAGTATATATCTACGACAAGTGAGATAAAGCTAGATGGTATCATAAACGGCGGAGGTTATATGTGCGGATGTTCAATATGCAATTTTACAACTATTCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTTTCAAAACTAGACATCCAAATAATCATATATACTTGGAGAATGGGAGGCCGATTTATAGTGTTATACAGGAAATTAAGAGTGCACCTCTTAGCATTTTAGATGAAGTGATTAAGGAAGTAGCGGGTTCATCTGTTAACATGGATTCATTTGAGGCTTGGCAAGCAAGTTTCCACAAGGACAGTACAGGTATTGAAGTGGAAAATGATAATGTGAAGCTTCCTAAATTGTCACATCCCATTGAGAGACCAAACCCTAATTTATCCAATCCAGTCATGCAACAGAAGAAATCGGCAGAGAAAGGCACCAAAAGAAGGGACAATGATCTTCACAGGCTACTTTTCATGCCAAATGGGCTTCCAGATGGGGCTGAGCTAGCTTACTTTGTCAAAGGACAGAGAATACTTGGAGGCTACAAGCAAGGAAATGGTATACTCTGTAGTCACTGTAATCGCGAGATTAGCCCTTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCCTACCGTCACATTTATACTACAAATGGTCTTACACTTCATGATATTGCCATTTCCCTGGCTAGTGGGCAAAAACTTTCATCTGGAGACAGTGATGATATGTGTGCTGCATGTGGTAATGGAGGGGATTTGATTTTCTGTGATCGATGTCCTCGAGCTTTCCACACAGGGTGCCTGCATCTACAGAATGTTCCAGAAGGTGTTTGGTGTTGCCCAAACTGTAGAGATAAAGTGGGTTCCAGTTTGAAGGCAGCTTCTGGAGGCCCTTCGAGTTTTCCAAAACCAATTGTATTTAGGTTGACACGAGTTGTTAAAGCACCTGAGTATGAGATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGCGCTGCTAAATTTGATGATCGAACTGTACTGTTATGTGATCAATGTGAAAGAGAATTCCATGTGGGCTGTCTGCGGGATAGTGGATTATGTGATCTGCAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGATGAGTGCAGTAATATCCATGTGGTCCTTCAGAATACAGTTTTGAACGGGGCACAAATTATTCCAGATTCATTATCAGATTTAATAATCAGAAAGCACGTTGGAAAAGGATTATTTGTTGATGAAGCTCTTAATGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTACCCAGAAGATCTTCCATTTCTTTCAAGGGCAACTTCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATCTGATACCCGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTTGGAGGAATGTATTGTGTTGTTTTAATTGTGAGGTCTATAGTTGTATCGGCTGGTCTTCTTAGGATCTTTGGTCGTGAAGTTGCTGAGCTTCCTATTGTTGCCACAAGTAGAGAACATCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCTTAAATGTGCAAAACCTTGTACTCCCTGCAGCCGAGGATGCTGAATCAATCTGGACCAATAAATTGGGTTTCAGAAAAATGAGTGAAGAACAATTGGTGAAGTATATGAGGGAGGTCCAGCTGACGATCTTCAATGGGACATCGATGCTAGAGAAGGTGGTGCAGCGGTCAACATGA 2526 42.79 MGEEAAGLAAVANKPLEKESASSTELKRDHQYLDEDTEPESFHNKKQAKEVSNEDVRSEVSNPVISPKGNHFQDITSQPDEQENTNQVERGDLTSACSGNSSSEDTSSDGVRCQNNMSRNDVDVCDDDEVSRVVIEIPKHASSTGIKKITFKFSKKKDNNDASRSADKVHSYGNSDKDCKPEPSSVDDAYTETSAHSWEGCAESSRFPPGPSKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYISTTSEIKLDGIINGGGYMCGCSICNFTTILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSSVNMDSFEAWQASFHKDSTGIEVENDNVKLPKLSHPIERPNPNLSNPVMQQKKSAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLSSGDSDDMCAACGNGGDLIFCDRCPRAFHTGCLHLQNVPEGVWCCPNCRDKVGSSLKAASGGPSSFPKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLQELPKDKWFCCDECSNIHVVLQNTVLNGAQIIPDSLSDLIIRKHVGKGLFVDEALNDVRWQILSGKSRYPEDLPFLSRATSIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTNKLGFRKMSEEQLVKYMREVQLTIFNGTSMLEKVVQRST 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1526693 1533524 + Carg01038-RA Car06g00270 150006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00270 841 Pfam PHD-finger 491 533 IPR019787 -
Car06g00270 841 ProSiteProfiles Zinc finger PHD-type profile. 568 629 IPR019787 -
Car06g00270 841 MobiDBLite consensus disorder prediction 156 185 - -
Car06g00270 841 MobiDBLite consensus disorder prediction 370 384 - -
Car06g00270 841 MobiDBLite consensus disorder prediction 20 56 - -
Car06g00270 841 ProSitePatterns Zinc finger PHD-type signature. 492 531 IPR019786 -
Car06g00270 841 ProSitePatterns Zinc finger PHD-type signature. 571 626 IPR019786 -
Car06g00270 841 MobiDBLite consensus disorder prediction 1 123 - -
Car06g00270 841 ProSiteProfiles Zinc finger PHD-type profile. 489 534 IPR019787 -
Car06g00270 841 MobiDBLite consensus disorder prediction 57 120 - -
Car06g00270 841 MobiDBLite consensus disorder prediction 156 191 - -
Car06g00270 841 MobiDBLite consensus disorder prediction 363 393 - -
Car06g00270 841 Pfam Tify domain binding domain 425 474 IPR032308 -
Car06g00270 841 Pfam Tify domain binding domain 258 312 IPR032308 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g00270 Car14g00139 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00597 Car-Chr2:4517071 Car06g00270 Car-Chr6:1526693 3.16E-40 dispersed
Car06g00270 Car-Chr6:1526693 Car20g00471 Car-Chr20:2608235 1.29E-06 dispersed
Car14g00139 Car-Chr14:648141 Car06g00270 Car-Chr6:1526693 0 wgd
Car04g00208 Car-Chr4:1159173 Car06g00270 Car-Chr6:1526693 6.45E-43 wgd
Car04g01102 Car-Chr4:6347091 Car06g00270 Car-Chr6:1526693 3.55E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3649 PF16135 TDBD 2.90E-12 No_clan Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00270 - - cmax:111481523 1545.41