Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00270 ATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTGCAAATAAGCCGCTGGAGAAAGAGAGCGCTTCGAGTACCGAATTGAAGCGTGACCATCAGTATCTCGATGAAGATACGGAACCTGAGTCGTTTCACAATAAGAAGCAGGCAAAAGAAGTGTCGAATGAAGACGTTCGTTCAGAAGTTTCTAATCCTGTAATTTCTCCGAAAGGGAATCATTTCCAAGATATTACCAGTCAGCCAGACGAGCAAGAAAATACCAACCAAGTTGAGCGTGGGGACCTTACGTCGGCTTGTTCGGGAAATTCAAGCTCAGAGGATACTTCAAGCGATGGAGTTCGTTGCCAGAACAACATGTCTCGGAATGATGTTGATGTGTGTGATGATGATGAAGTCTCCCGGGTTGTGATTGAAATTCCTAAGCATGCTAGTTCAACTGGAATTAAGAAAATTACGTTCAAATTCAGCAAAAAAAAGGACAACAATGACGCATCCAGATCAGCTGACAAAGTTCATTCTTATGGAAACTCTGACAAGGACTGTAAACCAGAACCATCCTCGGTTGACGATGCTTATACGGAGACATCTGCACATAGCTGGGAAGGCTGTGCTGAGAGCAGCAGGTTTCCTCCAGGCCCCAGTAAAATGGAACTGAAAATGTCGAAGAAGGTTTTGCCAAACAATTACCCGTCAAATGTGAAAAAGCTGCTGTCGACTGGTATACTTGACGGAGCTCGCGTCAAGTATATATCTACGACAAGTGAGATAAAGCTAGATGGTATCATAAACGGCGGAGGTTATATGTGCGGATGTTCAATATGCAATTTTACAACTATTCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTTTCAAAACTAGACATCCAAATAATCATATATACTTGGAGAATGGGAGGCCGATTTATAGTGTTATACAGGAAATTAAGAGTGCACCTCTTAGCATTTTAGATGAAGTGATTAAGGAAGTAGCGGGTTCATCTGTTAACATGGATTCATTTGAGGCTTGGCAAGCAAGTTTCCACAAGGACAGTACAGGTATTGAAGTGGAAAATGATAATGTGAAGCTTCCTAAATTGTCACATCCCATTGAGAGACCAAACCCTAATTTATCCAATCCAGTCATGCAACAGAAGAAATCGGCAGAGAAAGGCACCAAAAGAAGGGACAATGATCTTCACAGGCTACTTTTCATGCCAAATGGGCTTCCAGATGGGGCTGAGCTAGCTTACTTTGTCAAAGGACAGAGAATACTTGGAGGCTACAAGCAAGGAAATGGTATACTCTGTAGTCACTGTAATCGCGAGATTAGCCCTTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCCTACCGTCACATTTATACTACAAATGGTCTTACACTTCATGATATTGCCATTTCCCTGGCTAGTGGGCAAAAACTTTCATCTGGAGACAGTGATGATATGTGTGCTGCATGTGGTAATGGAGGGGATTTGATTTTCTGTGATCGATGTCCTCGAGCTTTCCACACAGGGTGCCTGCATCTACAGAATGTTCCAGAAGGTGTTTGGTGTTGCCCAAACTGTAGAGATAAAGTGGGTTCCAGTTTGAAGGCAGCTTCTGGAGGCCCTTCGAGTTTTCCAAAACCAATTGTATTTAGGTTGACACGAGTTGTTAAAGCACCTGAGTATGAGATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGCGCTGCTAAATTTGATGATCGAACTGTACTGTTATGTGATCAATGTGAAAGAGAATTCCATGTGGGCTGTCTGCGGGATAGTGGATTATGTGATCTGCAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGATGAGTGCAGTAATATCCATGTGGTCCTTCAGAATACAGTTTTGAACGGGGCACAAATTATTCCAGATTCATTATCAGATTTAATAATCAGAAAGCACGTTGGAAAAGGATTATTTGTTGATGAAGCTCTTAATGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTACCCAGAAGATCTTCCATTTCTTTCAAGGGCAACTTCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATCTGATACCCGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTTGGAGGAATGTATTGTGTTGTTTTAATTGTGAGGTCTATAGTTGTATCGGCTGGTCTTCTTAGGATCTTTGGTCGTGAAGTTGCTGAGCTTCCTATTGTTGCCACAAGTAGAGAACATCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCTTAAATGTGCAAAACCTTGTACTCCCTGCAGCCGAGGATGCTGAATCAATCTGGACCAATAAATTGGGTTTCAGAAAAATGAGTGAAGAACAATTGGTGAAGTATATGAGGGAGGTCCAGCTGACGATCTTCAATGGGACATCGATGCTAGAGAAGGTGGTGCAGCGGTCAACATGA 2526 42.79 MGEEAAGLAAVANKPLEKESASSTELKRDHQYLDEDTEPESFHNKKQAKEVSNEDVRSEVSNPVISPKGNHFQDITSQPDEQENTNQVERGDLTSACSGNSSSEDTSSDGVRCQNNMSRNDVDVCDDDEVSRVVIEIPKHASSTGIKKITFKFSKKKDNNDASRSADKVHSYGNSDKDCKPEPSSVDDAYTETSAHSWEGCAESSRFPPGPSKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYISTTSEIKLDGIINGGGYMCGCSICNFTTILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSSVNMDSFEAWQASFHKDSTGIEVENDNVKLPKLSHPIERPNPNLSNPVMQQKKSAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLSSGDSDDMCAACGNGGDLIFCDRCPRAFHTGCLHLQNVPEGVWCCPNCRDKVGSSLKAASGGPSSFPKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLQELPKDKWFCCDECSNIHVVLQNTVLNGAQIIPDSLSDLIIRKHVGKGLFVDEALNDVRWQILSGKSRYPEDLPFLSRATSIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTNKLGFRKMSEEQLVKYMREVQLTIFNGTSMLEKVVQRST 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1526693 1533524 + Carg01038-RA Car06g00270 150006

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00270 841 Pfam PHD-finger 491 533 IPR019787 -
Car06g00270 841 ProSiteProfiles Zinc finger PHD-type profile. 568 629 IPR019787 -
Car06g00270 841 MobiDBLite consensus disorder prediction 156 185 - -
Car06g00270 841 MobiDBLite consensus disorder prediction 370 384 - -
Car06g00270 841 MobiDBLite consensus disorder prediction 20 56 - -
Car06g00270 841 ProSitePatterns Zinc finger PHD-type signature. 492 531 IPR019786 -
Car06g00270 841 ProSitePatterns Zinc finger PHD-type signature. 571 626 IPR019786 -
Car06g00270 841 MobiDBLite consensus disorder prediction 1 123 - -
Car06g00270 841 ProSiteProfiles Zinc finger PHD-type profile. 489 534 IPR019787 -
Car06g00270 841 MobiDBLite consensus disorder prediction 57 120 - -
Car06g00270 841 MobiDBLite consensus disorder prediction 156 191 - -
Car06g00270 841 MobiDBLite consensus disorder prediction 363 393 - -
Car06g00270 841 Pfam Tify domain binding domain 425 474 IPR032308 -
Car06g00270 841 Pfam Tify domain binding domain 258 312 IPR032308 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00270 - - - cmax:111481523 1545.41
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g00270 Car14g00139 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00597 Car-Chr2:4517071 Car06g00270 Car-Chr6:1526693 3.16E-40 dispersed
Car06g00270 Car-Chr6:1526693 Car20g00471 Car-Chr20:2608235 1.29E-06 dispersed
Car14g00139 Car-Chr14:648141 Car06g00270 Car-Chr6:1526693 0 wgd
Car04g00208 Car-Chr4:1159173 Car06g00270 Car-Chr6:1526693 6.45E-43 wgd
Car04g01102 Car-Chr4:6347091 Car06g00270 Car-Chr6:1526693 3.55E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g694 . . . . Bpe04g01561 . Bma04g01614 . Cmo06g00314 Cmo14g00154 . . . . . . Cpe08g01153 . . . . . . . . . . . . . . Cone3ag0322 . Cone13ag1327 Cone19ag1312 . . . Cme04g02602 . . Bda03g01749 Bda05g01208 . . . . Sed02g0695 . . Cma06g00312 . Car06g00270 Car14g00139 Cpe03g00132 . Bhi11g02231 Tan08g1981 Cmetu08g1975 . . . . Cla10g01990 Cam10g2058 Cec10g2099 Cco10g2081 Clacu10g2063 Cmu10g2811 Cre10g2204 Lsi03g02089 Csa03g03200 Chy04g02130 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car14g00139 CST 124 945 PHD Transcription Factor Family AT3G53680 53.3 5.1e-250 861.3
Car06g00270 CST 18 837 PHD Transcription Factor Family AT3G53680 53.5 1.1e-249 860.1
Car04g00208 . 464 590 PHD Transcription Factor Family AT3G53680 55.9 1.8e-37 155.2
Car20g00370 CST 306 444 PHD Transcription Factor Family AT3G53680 51.8 5.3e-37 153.7
Car04g01102 . 533 659 PHD Transcription Factor Family AT3G53680 54.3 2.0e-36 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005462 1 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3649 PF16135 TDBD 2.90E-12 No_clan Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00270 Car_Chr06 FPKM 1.422483 1.195575 13.518135 12.904823 5.876448 5.064785 6.931563 0.152175 0.064482 0.135874