Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00295 ATGCTGAATCTTAACCACGACGTTGTTCCATCGGAGATGGTTACTGAGAATTTTCTGAATCTTCCAGCGAACAGAATGGAAAACGCTGGATGTTTCAACTCGTCCTCCGTCGTTAATGGCGATCCTTCCGCCAGCACCACCAACGTCGACGAGGTTTTCCCGTTCACTTTCGGTAAAAATTCCGCGGTTCAAGAAAGCTCAACGGTGAAATCACTTTCTATTTCCGATGACCACCGCGACCAGACGATGGAGCTCTTCCCGTTAACGGACGGATTAAATTCTATTTCCGATGAAATTAATTCCGATGACCCCCGCGACCAGACGATGGAGTTCTTCCCGTTAACCGAAGGATTAAATTCTAGCTCGAGTACTCAGAAGCAGTGGCCGGAGGTTTCTCCATCGGAATTCAATCATGGAGACGGCGGCGCACCGGCGAAGCCACAGGATCAGGCGATGAGGAAAAACAGACGCGGTCCAAGGCCTCGAAGTTCGCAGTATCGGGGCGTTACTTCCATGACCTTATTAGGTTGCTTGAATTTGAATCCGCCATTTATGCCGTTCTTGAGCACCTTTTCTGTTCGTTACCAGGGACTGCGGGAAACAGGCGGTTTCGATACTGCTCATGCTGCCGCCAGAGCATATGATAAAGCGGCGATCAAGTTTCGGGGGGTCGACGCAGATATCAATTTCAGTGTCAGAAATTATGAAGAAGATATCAAACAGATGAGTAATATCACTAAGGAAGAGCTTATTCATAATCTTCGTCGCCGAAGCAATGGATTTACAAGAGGGAGCTCGAAGTACAGAGGAGTTACCTTGCATAAATGTGGTCGATGGGAAGCTCGGATGGGCCAGTTCTTAGGCAGAAAGTACATGTATCTTGGTCTCTTTGATAGTGAGATTGAAGCTGCAAGGGCCTATGACATAGCTGCCTTAAGATGCAATGGTAAAGAGGCTGTAACAAACTTTGATCCAAGTTCTTATATGTCAGAGATGGCTGCAGAGACTGACACAGGAGAGGACAACCAGAGTCTTGACCTGAGTTTGCGAATTGCTCCCCCCAATCATTCTGACCCTCAAAGTGAGAGCATTGGCATGTTTGGTAATGGTTGTCATCTCAGCTCACCCGACGTCGTCGTTGATGGTAGAACGACGCTTGAGAACTCTGTTTCAGCAGCAATTGGATCTTCTCAGCCATATGGCTATGCTGTGCCTTCAAATTCCTGTTTCTATCCCATCTCCAGGGACAGAGCAGCAGAGACGAGAATGGGGGAGTGGCAAATCCATGGCCACTCAAATGGATTAACCTCTGTGCCATTCTTCTCTGCTGCAGCATCATCAGGATTCCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAACTTCTTCTTCTTCTGCCATTTCATCCTCTGCTGTTGGTGAAATCCATTTCTCAGCTATTTTCCATCACCATGACAGCAACTTATCCAACTTCTACTGTAGGAATTGA 1491 47.02 MLNLNHDVVPSEMVTENFLNLPANRMENAGCFNSSSVVNGDPSASTTNVDEVFPFTFGKNSAVQESSTVKSLSISDDHRDQTMELFPLTDGLNSISDEINSDDPRDQTMEFFPLTEGLNSSSSTQKQWPEVSPSEFNHGDGGAPAKPQDQAMRKNRRGPRPRSSQYRGVTSMTLLGCLNLNPPFMPFLSTFSVRYQGLRETGGFDTAHAAARAYDKAAIKFRGVDADINFSVRNYEEDIKQMSNITKEELIHNLRRRSNGFTRGSSKYRGVTLHKCGRWEARMGQFLGRKYMYLGLFDSEIEAARAYDIAALRCNGKEAVTNFDPSSYMSEMAAETDTGEDNQSLDLSLRIAPPNHSDPQSESIGMFGNGCHLSSPDVVVDGRTTLENSVSAAIGSSQPYGYAVPSNSCFYPISRDRAAETRMGEWQIHGHSNGLTSVPFFSAAASSGFLSSSSSSSSSSSTSSSSAISSSAVGEIHFSAIFHHHDSNLSNFYCRN 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1651111 1653583 + Carg01013-RA Car06g00295 150031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00295 496 ProSiteProfiles AP2/ERF domain profile. 165 231 IPR001471 GO:0003700|GO:0006355
Car06g00295 496 MobiDBLite consensus disorder prediction 116 168 - -
Car06g00295 496 ProSiteProfiles AP2/ERF domain profile. 267 324 IPR001471 GO:0003700|GO:0006355
Car06g00295 496 MobiDBLite consensus disorder prediction 116 132 - -
Car06g00295 496 Pfam AP2 domain 266 314 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00295 Car-Chr6:1651111 Car14g00972 Car-Chr14:6919663 1.96E-71 dispersed
Car14g00161 Car-Chr14:752508 Car06g00295 Car-Chr6:1651111 1.03E-142 wgd
Car02g00621 Car-Chr2:4684407 Car06g00295 Car-Chr6:1651111 1.71E-82 wgd
Car04g00244 Car-Chr4:1361453 Car06g00295 Car-Chr6:1651111 2.10E-17 wgd
Car04g01331 Car-Chr4:7718546 Car06g00295 Car-Chr6:1651111 1.60E-39 wgd
Car06g00295 Car-Chr6:1651111 Car07g00921 Car-Chr7:5119172 2.89E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3650 PF00847 AP2 1.40E-08 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00295 K09284 - csv:101211242 518.85