Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00298 ATGGCTGATGCTCCGGCGAGCCCTGGCGGAGGTAGCCATGAGAGCGGTGAGCATAGTCCGAGGTCTAATGTTCGTGAACAGGACAGGTTTCTTCCGATTGCAAATATTAGTAGGATCATGAAGAAGGCTCTTCCGGCTAATGGTAAGATTGCGAAGGATGCCAAGGAGACCGTACAAGAATGTGTTTCGGAGTTCATCAGTTTTATCACTAGCGAGGCTAGTGATAAATGTCAAAGAGAGAAACGGAAGACGATTAATGGAGATGATTTGCTTTGGGCTATGGCGACTCTTGGATTTGAGGATTATATCGATCCGCTAAAAACCTACTTGACGAAATACAGAGAGACAGGGTGA 354 46.33 MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETG 117
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1664127 1667642 + Carg01010-RA Car06g00298 150034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00298 117 MobiDBLite consensus disorder prediction 1 27 - -
Car06g00298 117 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Car06g00298 117 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00298 Car-Chr6:1664127 Car10g00245 Car-Chr10:1164343 1.61E-17 dispersed
Car04g00733 Car-Chr4:4256422 Car06g00298 Car-Chr6:1664127 6.13E-56 transposed
Car04g01334 Car-Chr4:7730799 Car06g00298 Car-Chr6:1664127 2.89E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3651 PF00808 CBFD_NFYB_HMF 3.00E-28 CL0012 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00298 K08065 - csv:101212699 223.402