Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00301 ATGGAGCAAGCGTTTTCAGACTTCGACATAGCTGGGGATATCTTTGATTTGTACTTCCCCCATTCTGTCTTCACTGTTGAAAATGAATGGCTTAAGCTCATTTCTCAGCTTATTTTCTTCTTTTCTTCTCCGGCAGGTCGGCATCTTGCTTCACAGGCTATTGATGATGGTCGTGGCATCTTTATTTTGTCAATTGACTTTCAACACTTCCGAAAGATTTGCGATGAACCTGAACTTTACCTAATGTTAGAGAAAGATCCTAAATTTGCTCTCAAATGTATGAGTGCTGCACTTCACCAGGTAATGAGGACCAAATGGGCGCACAATTTAGAAGTTGTCGCAAAAGTTCTAGTCCGATTGCACAACTATTCAGAATCCATGCTTGCTTTGAAGAACTTGAAGGCAGCATATATTGACAAGCTTGTATCAGTGCGTGGTACTGTTGTTAAAGTTAGCACTGTTAAGCCTTTGGTGGTGCAAATGAGCTTTGATTGTGCTAAATGTAAAAGCAATATTACACGCATCTTTCCTGATGGTAAGTTTTCACCTCCATCGTTTTGTGAGCTGGATGGGTGCAAAAGCAAAACATTTGTTCCCATTCGATCTACAGCTGAAGCAATTGACTTCCAGAAAATACGATTGCAAGAACTCACTAAATCTGATGACCATGAAGAGGGAAGGGTGCCTCGAACTGTAGAATGTGAACTGACTGAAGATCTTGTTGACGCATGCATCCCTGGAGATGTTGTCACTGTTACCGGAATCATAAAAGTAATTAACAATTACATGGATATTGGAGGAGGAAAATCGAAGGGCAAAAGTCAAGGATTGTACTATTTGTATCTGGAGGCTGTTTCAATAAAAAATTCCAAGTCACAATCTTCACCTGAGGAGATGCAAGATTCTAACTCTAATGCAAGGGCAACGGAGTTGCTTGACTTGTTCTCATTCTCCCCAAGAGATTTGGAATTTATTGTGAAATTCTCTGGGGAATATGGCTCCGATGTTTTCCGTCAAATACTTCAATCTGTATGTCCATCCATCTATGGACATGAACTTGTTAAAGCTGGAATAACACTAGCTCTATTTGGTGGTGTTCGAAAGCATTCAAAAGACCAGAATAAAGTTCCTGTTAGAGGGGATATTCATGTCATAGTTGTTGGTGATCCTGGACTTGGCAAAAGTCAAATACTGCAAGCAGCTGCAGCTATTTCTCCACGTGGAATTTATGTTTGTGGTAATGCAACAACCAAGGCGGGCCTAACTGTAGCTGTTGTGAGGGATTCCATGACAAATGACTATGCTTTTGAGGCTGGGGCTATGGTACTTGCAGATGGTGGATTATGCTGTATAGATGAGTTTGATAAAATGTCTGCAGAACATCAGGCCCTATTGGAAGCCATGGAACAACAATGTGTATCGATTGCAAAAGCTGGGCTGGTAGCAAGTCTATCAGCACGTACTTCTGTTTTAGCTGCAGCTAACCCTGTTGGCGGTCATTACAACCGGGCAAAAACTGTGAATGAAAACTTGAAGATGAGAGCTGCTCTTCTCTCGAGATTTGATTTAGTTTTCATATTGCTGGATAAACCTGACGAATTTCTGGATAAGAGAGTCTCAGAGCACATCATGTCGCTTCATGCAGGATATGGGGAACGCGCTTCTACAGCAAAAAGATTACGCAAAGATATAACTCCTTTGGCCTTAAAGAATGTACCAATGGAGAATGATGGAAAAGGAGATGCTTGTTCAAAAGGCGAGTCGTTAGTTTCAAGACTGAGATTGGACCGAGCGAAAGATAGCGATTTTGTACCATTACCTGGCCAACTTCTTCGCAAATATATAGCCTATGCAAGAACTTTTGTCTTCCCCAGGATGTCAAAGCCGGCGGCAGACATTTTGCAAAGATTTTACTTACAACTGCGTGACCAGAATACATCAGCTGATGGTACACCAATTACAGCAAGGCAACTCGAAAGTCTGGTGAGGCTGGCAGAAGCTCGAGCACGAGTAGACCTCAGGGAAGAAATTACAGTACAGGATGCCATGGATGTGGTAGAAATAATGAAGGAATCCCTTTATGACAAGTACGTAGATGAACATGGAGTCCTGGATTTTGGTCGAAGTGGAGGAATGAGTCAGCAGAAAGAAGCCAAGCGATTTTTAAGTGCACTCAACAAGCAATCAGATTTGCAGCAGAAAGATTGTTTCTCCATCTCCGAAATATATATCTTGGCAGATAGGATTGGCCTGCAAGTACCCGACATCGATACCTTCATAGAAAATCTTAACAGTGTTGGATATCTGCTTAAGAAGGGACCAAAGACATATCAGGTGCTATCCTCATCTTACACCAGTCAATCTACAAGGTCTAGGGGATAA 2382 41.86 MEQAFSDFDIAGDIFDLYFPHSVFTVENEWLKLISQLIFFFSSPAGRHLASQAIDDGRGIFILSIDFQHFRKICDEPELYLMLEKDPKFALKCMSAALHQVMRTKWAHNLEVVAKVLVRLHNYSESMLALKNLKAAYIDKLVSVRGTVVKVSTVKPLVVQMSFDCAKCKSNITRIFPDGKFSPPSFCELDGCKSKTFVPIRSTAEAIDFQKIRLQELTKSDDHEEGRVPRTVECELTEDLVDACIPGDVVTVTGIIKVINNYMDIGGGKSKGKSQGLYYLYLEAVSIKNSKSQSSPEEMQDSNSNARATELLDLFSFSPRDLEFIVKFSGEYGSDVFRQILQSVCPSIYGHELVKAGITLALFGGVRKHSKDQNKVPVRGDIHVIVVGDPGLGKSQILQAAAAISPRGIYVCGNATTKAGLTVAVVRDSMTNDYAFEAGAMVLADGGLCCIDEFDKMSAEHQALLEAMEQQCVSIAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMRAALLSRFDLVFILLDKPDEFLDKRVSEHIMSLHAGYGERASTAKRLRKDITPLALKNVPMENDGKGDACSKGESLVSRLRLDRAKDSDFVPLPGQLLRKYIAYARTFVFPRMSKPAADILQRFYLQLRDQNTSADGTPITARQLESLVRLAEARARVDLREEITVQDAMDVVEIMKESLYDKYVDEHGVLDFGRSGGMSQQKEAKRFLSALNKQSDLQQKDCFSISEIYILADRIGLQVPDIDTFIENLNSVGYLLKKGPKTYQVLSSSYTSQSTRSRG 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1678624 1685319 - Carg01007-RA Car06g00301 150037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00301 793 Coils Coil 451 471 - -
Car06g00301 793 ProSiteProfiles MCM family domain profile. 336 543 IPR001208 GO:0003677|GO:0005524|GO:0032508
Car06g00301 793 SMART AAA_5 380 532 IPR003593 -
Car06g00301 793 Pfam MCM P-loop domain 334 547 IPR001208 GO:0003677|GO:0005524|GO:0032508
Car06g00301 793 Pfam MCM OB domain 130 259 IPR033762 -
Car06g00301 793 CDD AAA 383 527 - -
Car06g00301 793 Pfam MCM AAA-lid domain 610 693 IPR041562 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00301 Car-Chr6:1678624 Car06g01490 Car-Chr6:10509629 1.41E-91 dispersed
Car19g00528 Car-Chr19:6875084 Car06g00301 Car-Chr6:1678624 1.11E-45 dispersed
Car14g00168 Car-Chr14:795104 Car06g00301 Car-Chr6:1678624 2.47E-74 transposed
Car14g00167 Car-Chr14:788945 Car06g00301 Car-Chr6:1678624 1.05E-21 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00301 K10737 - csv:101211972 1415.98