Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00308 ATGGCTTCTACAGCCGGCACACAGGTTGTCCAGACCACTACTGTGACTCCATTCACCAGAAAATCTAGAGAGGAAACGGCAGCAATCAAGATTCAATCATTTTTTCGTGGATATCTGGCAAGATCAGAAATACGAACCTTAAGAGGGCTGTTGAGGTTGAAATTATTGATGGAGAGTTCAGTTCTGAATCGTCAAGCCATGAACACCATCCGGTGTATGCAAGTTTTTGTCCGTGTCCATTCCCAGATCCGATCAAGAAGGTTGAGGAAGCTGGAGGAAAATCAGGCTCTCCAGAAACAACTCCTACAAAAGCATACAAAAGAACAAGAGACGTCTCAGGTTGGGAAAGAGTGGAACGACAGCACACAATCAAAGGAACAAGTTGAGGCTAAACTACTAAGCAAGCATCAAGCAGCCATGAGAAGAGAGAGAGCATTGGCTTATGCCTTTTCTCGACAGAAAATCTGGAGAAATTCTTCGAGGTCAACAAATCCACTATTCACAGATCCGAACAATCCCACCTGGGGATGGAGCTGGTTGGAGAGATGGATGGCAGCTCAACAATGTGGGGATGCGAGCTCTGGTAATGTTTGTGGAGAAATTAATAAAGCCGATGCTCAATCCAAACAGAGCTCGGAGATAAATTCGCCAACAGTAAGCCGATCTGGAAGCCGTAGATATACATTCCAGCCCCTCACGATTCATTCCAGACGTAGATCAGTTGCAGAGGCGAATCAACTGAAGCCATCAAGCACACGAAAGAGCTCAGTTCCAGATGATTCTCTCGAAGCTAATGCTCAATTTGAACTGAGCTCGGAGGCGAATTCGTCAACAGCAAGCCGATCCGAGAGCCGCAGATATACTTTCCAGTCCTTCTCAACTTCTTCCAGACAAAGTTCAGTCGCAGAGCCAAAGAAATCGAAATCATCAACCATAAAAAAGAACTCGGTTCCAGAAATTGAAGGATTCCAGCTGACCTCGAAGGCAAATTCGCCAACAGCAAGTCGATCCGAGAGCCACAGATATACCTTCCCGTCCCTCTCAACTCCTTCTCCGCGAAGATCAGTCGCAGAGGCAATGAAATCAAAGCAATTAGGCGCCAGAAATAGCACGATTCCAGATGATGACAGCAAGAGCCTGGCAAGTATAAAATCAAACAATGGAGGACCTCGATCATCCGTATGGGACGAAGAAAGCCAAAACAGTTCACAAAATCTTCCGAGTTACATGACGTTCACCGCATCGGCAAGAGCCAAATCGAAGCTTCATACTCCATTCGAGTCGGAGAAGAATGGAGCTCGAGAAATAACGTCGTTTAGTTCATCTGCTAAGAAACAACTCTTTTCTCACAGTTCAGCAATAATTCGTTCGTTAATTGCTTTAATA 1386 45.38 MASTAGTQVVQTTTVTPFTRKSREETAAIKIQSFFRGYLARSEIRTLRGLLRLKLLMESSVLNRQAMNTIRCMQVFVRVHSQIRSRRLRKLEENQALQKQLLQKHTKEQETSQVGKEWNDSTQSKEQVEAKLLSKHQAAMRRERALAYAFSRQKIWRNSSRSTNPLFTDPNNPTWGWSWLERWMAAQQCGDASSGNVCGEINKADAQSKQSSEINSPTVSRSGSRRYTFQPLTIHSRRRSVAEANQLKPSSTRKSSVPDDSLEANAQFELSSEANSSTASRSESRRYTFQSFSTSSRQSSVAEPKKSKSSTIKKNSVPEIEGFQLTSKANSPTASRSESHRYTFPSLSTPSPRRSVAEAMKSKQLGARNSTIPDDDSKSLASIKSNNGGPRSSVWDEESQNSSQNLPSYMTFTASARAKSKLHTPFESEKNGAREITSFSSSAKKQLFSHSSAIIRSLIALI 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1710739 1713860 - Carg00999-RA Car06g00308 150044

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00308 462 Pfam IQ calmodulin-binding motif 27 44 IPR000048 GO:0005515
Car06g00308 462 MobiDBLite consensus disorder prediction 313 355 - -
Car06g00308 462 MobiDBLite consensus disorder prediction 204 405 - -
Car06g00308 462 Coils Coil 88 108 - -
Car06g00308 462 MobiDBLite consensus disorder prediction 102 127 - -
Car06g00308 462 MobiDBLite consensus disorder prediction 204 306 - -
Car06g00308 462 ProSiteProfiles IQ motif profile. 24 52 IPR000048 GO:0005515
Car06g00308 462 MobiDBLite consensus disorder prediction 364 405 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00308 - - - cmax:111498714 776.163
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car03g01126 Car06g00308 CCT
Car06g00308 Car07g00918 CCT
Car03g01126 Car06g00308 ECH
Car06g00308 Car07g00918 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00308 Car-Chr6:1710739 Car09g00291 Car-Chr9:1565094 1.00E-34 dispersed
Car15g00406 Car-Chr15:2112389 Car06g00308 Car-Chr6:1710739 1.69E-61 wgd
Car03g01126 Car-Chr3:9095471 Car06g00308 Car-Chr6:1710739 5.57E-12 wgd
Car06g00308 Car-Chr6:1710739 Car07g00918 Car-Chr7:5109008 1.02E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g606 . . . . Bpe04g01589 . . Bma10g00020 Cmo06g00353 . . Cma07g00937 Car03g01126 Car07g00918 . Cpe10g00203 . Bhi03g01672 . . . Hepe04g0914 . . Cla04g00869 Cam04g0841 Cec04g1024 Cco04g1083 Clacu04g0929 Cmu04g0918 Cre01g0429 . . Cone13ag1287 Cone19ag1272 Lsi01g01363 Csa04g01422 Chy08g00816 Cme04g02549 Blo07g01409 Blo09g00550 Bda03g01731 Bda05g01241 . . . . Sed04g1336 . Cmo07g00981 Cma06g00359 . Car06g00308 . . Cpe19g00400 Bhi11g02125 Tan08g1905 Cmetu04g2215 . Hepe05g0240 . . Cla10g01948 Cam10g2014 Cec10g2056 Cco10g2042 Clacu10g2021 Cmu10g2771 Cre10g2162 Lsi03g02046 Csa03g03255 Chy04g02086 Cme08g02328
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car06g00308 CCT,ECH 9 187 IQD Protein Family AT3G09710 57.5 3.0e-50 196.8
Car04g01432 CCT,CST,ECH 84 236 IQD Protein Family AT3G09710 53.9 3.7e-40 163.3
Car04g02506 CCT,CST,ECH 1 282 IQD Protein Family AT5G03040 52.6 2.5e-65 246.9
Car06g00308 CCT,ECH 3 187 IQD Protein Family AT5G03040 63.8 8.6e-58 221.9
Car15g00406 CCT,CST,ECH 1 467 IQD Protein Family AT3G52290 53.0 5.5e-99 358.6
Car04g02506 CCT,CST,ECH 1 285 IQD Protein Family AT3G52290 66.7 6.5e-84 308.5
Car06g00308 CCT,ECH 8 187 IQD Protein Family AT3G52290 55.6 2.9e-47 186.8
Car03g01126 CCT,CST,ECH 95 284 IQD Protein Family AT2G26410 50.3 5.6e-37 152.9
Car11g00811 . 1 412 IQD Protein Family AT3G22190 57.2 1.2e-95 347.4
Car10g00782 . 23 333 IQD Protein Family AT3G22190 50.1 8.1e-63 238.4
Car01g01342 . 1 434 IQD Protein Family AT2G26180 59.7 4.0e-115 412.1
Car09g00291 . 1 438 IQD Protein Family AT2G26180 58.4 8.4e-113 404.4
Car16g00380 . 40 223 IQD Protein Family AT2G33990 52.9 2.1e-48 189.9
Car16g00380 . 43 216 IQD Protein Family AT3G15050 61.6 1.6e-53 206.8
Car06g00798 . 1 500 IQD Protein Family AT4G00820 55.7 3.5e-127 452.6
Car06g00798 . 1 500 IQD Protein Family AT1G01110 52.4 1.8e-123 440.3
Car08g00629 CCT,CST,ECH 1 397 IQD Protein Family AT3G16490 52.6 9.4e-74 274.6
Car10g00607 CST 1 376 IQD Protein Family AT3G16490 52.8 2.7e-68 256.5
Car11g00535 CST 1 382 IQD Protein Family AT3G16490 51.4 4.5e-68 255.8
Car17g00704 CCT,CST,ECH 1 389 IQD Protein Family AT3G16490 50.5 2.3e-67 253.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013853 0 1 0 0 0 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00308 Car_Chr06 FPKM 63.856777 69.028549 66.845314 71.507683 52.816753 51.201321 52.806717 55.533947 55.229 54.773808