Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00308 ATGGCTTCTACAGCCGGCACACAGGTTGTCCAGACCACTACTGTGACTCCATTCACCAGAAAATCTAGAGAGGAAACGGCAGCAATCAAGATTCAATCATTTTTTCGTGGATATCTGGCAAGATCAGAAATACGAACCTTAAGAGGGCTGTTGAGGTTGAAATTATTGATGGAGAGTTCAGTTCTGAATCGTCAAGCCATGAACACCATCCGGTGTATGCAAGTTTTTGTCCGTGTCCATTCCCAGATCCGATCAAGAAGGTTGAGGAAGCTGGAGGAAAATCAGGCTCTCCAGAAACAACTCCTACAAAAGCATACAAAAGAACAAGAGACGTCTCAGGTTGGGAAAGAGTGGAACGACAGCACACAATCAAAGGAACAAGTTGAGGCTAAACTACTAAGCAAGCATCAAGCAGCCATGAGAAGAGAGAGAGCATTGGCTTATGCCTTTTCTCGACAGAAAATCTGGAGAAATTCTTCGAGGTCAACAAATCCACTATTCACAGATCCGAACAATCCCACCTGGGGATGGAGCTGGTTGGAGAGATGGATGGCAGCTCAACAATGTGGGGATGCGAGCTCTGGTAATGTTTGTGGAGAAATTAATAAAGCCGATGCTCAATCCAAACAGAGCTCGGAGATAAATTCGCCAACAGTAAGCCGATCTGGAAGCCGTAGATATACATTCCAGCCCCTCACGATTCATTCCAGACGTAGATCAGTTGCAGAGGCGAATCAACTGAAGCCATCAAGCACACGAAAGAGCTCAGTTCCAGATGATTCTCTCGAAGCTAATGCTCAATTTGAACTGAGCTCGGAGGCGAATTCGTCAACAGCAAGCCGATCCGAGAGCCGCAGATATACTTTCCAGTCCTTCTCAACTTCTTCCAGACAAAGTTCAGTCGCAGAGCCAAAGAAATCGAAATCATCAACCATAAAAAAGAACTCGGTTCCAGAAATTGAAGGATTCCAGCTGACCTCGAAGGCAAATTCGCCAACAGCAAGTCGATCCGAGAGCCACAGATATACCTTCCCGTCCCTCTCAACTCCTTCTCCGCGAAGATCAGTCGCAGAGGCAATGAAATCAAAGCAATTAGGCGCCAGAAATAGCACGATTCCAGATGATGACAGCAAGAGCCTGGCAAGTATAAAATCAAACAATGGAGGACCTCGATCATCCGTATGGGACGAAGAAAGCCAAAACAGTTCACAAAATCTTCCGAGTTACATGACGTTCACCGCATCGGCAAGAGCCAAATCGAAGCTTCATACTCCATTCGAGTCGGAGAAGAATGGAGCTCGAGAAATAACGTCGTTTAGTTCATCTGCTAAGAAACAACTCTTTTCTCACAGTTCAGCAATAATTCGTTCGTTAATTGCTTTAATA 1386 45.38 MASTAGTQVVQTTTVTPFTRKSREETAAIKIQSFFRGYLARSEIRTLRGLLRLKLLMESSVLNRQAMNTIRCMQVFVRVHSQIRSRRLRKLEENQALQKQLLQKHTKEQETSQVGKEWNDSTQSKEQVEAKLLSKHQAAMRRERALAYAFSRQKIWRNSSRSTNPLFTDPNNPTWGWSWLERWMAAQQCGDASSGNVCGEINKADAQSKQSSEINSPTVSRSGSRRYTFQPLTIHSRRRSVAEANQLKPSSTRKSSVPDDSLEANAQFELSSEANSSTASRSESRRYTFQSFSTSSRQSSVAEPKKSKSSTIKKNSVPEIEGFQLTSKANSPTASRSESHRYTFPSLSTPSPRRSVAEAMKSKQLGARNSTIPDDDSKSLASIKSNNGGPRSSVWDEESQNSSQNLPSYMTFTASARAKSKLHTPFESEKNGAREITSFSSSAKKQLFSHSSAIIRSLIALI 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1710739 1713860 - Carg00999-RA Car06g00308 150044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00308 462 Pfam IQ calmodulin-binding motif 27 44 IPR000048 GO:0005515
Car06g00308 462 MobiDBLite consensus disorder prediction 313 355 - -
Car06g00308 462 MobiDBLite consensus disorder prediction 204 405 - -
Car06g00308 462 Coils Coil 88 108 - -
Car06g00308 462 MobiDBLite consensus disorder prediction 102 127 - -
Car06g00308 462 MobiDBLite consensus disorder prediction 204 306 - -
Car06g00308 462 ProSiteProfiles IQ motif profile. 24 52 IPR000048 GO:0005515
Car06g00308 462 MobiDBLite consensus disorder prediction 364 405 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car03g01126 Car06g00308 CCT
Car06g00308 Car07g00918 CCT
Car03g01126 Car06g00308 ECH
Car06g00308 Car07g00918 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00308 Car-Chr6:1710739 Car09g00291 Car-Chr9:1565094 1.00E-34 dispersed
Car15g00406 Car-Chr15:2112389 Car06g00308 Car-Chr6:1710739 1.69E-61 wgd
Car03g01126 Car-Chr3:9095471 Car06g00308 Car-Chr6:1710739 5.57E-12 wgd
Car06g00308 Car-Chr6:1710739 Car07g00918 Car-Chr7:5109008 1.02E-08 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00308 - - cmax:111498714 776.163