Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00353 ATGGATAGAGAGTGGGGGTCCAAGCCGGGAAGTGGAGGAGCGGCCTCTGCACAGAATGAAGCTATCGATCGGAGAGAGCGTCTTCGACGGCTTGCTCTCGAGACCATCGATCTCGCCAAGGATCCCTACTTTATGCGCAATCATCTTGGAAGTTATGAGTGTAAGCTTTGCTTGACTCTGCACAATAATGAGGGAAATTACTTGGCGCACACGCAGGGGAAGCGCCATCAGACTAATTTGGCGAAGAGAGCAGCCCGTGAAGCCAAGGAGGCTCCTGCTCAACCTCAACCCCACAAGCGGAAGGTCTCTGTTCGCAAAACAGTTAAAATTGGGAGGCCTGGTTATCGAGTAACGAAGCAATTTGATTCCGAGACAAAGCAGAGATCTCTGCTTTTCCAAATTGAATACCCAGAAATTGAAGACCTAGCAAAGCCAAGACACCGGTTTATGTCCTCTTATGAGCAGCGGGTGCAACCGTTCGATAAAAGATACCAATATCTTCTGTTTGCAGCTGAACCCTATGAGATAATTGCATTCAAGGTTCCAAGCACAGAGATTGACAAATCCACACCAAAATTCTTCTCTCACTGGGATCCAGACTCGAAAATGTTCACGTTGCAGTTGTATTTTAAATCCAAACCACTAGAGGCAAACAAGCCACAAACTGTGCCTGCAGCCAATGGAACGGTGCCATTGCCGCCACCACCACAAGCTCCACCACCGCCCCCACCTCCACCACAGCAAGGGGCACCACCAAGAGTTCCTCCTCCTCCGATGCCTGGATCCTTGCCGCCTCCCCCTCCTGTAATGGCAAATGGTCCTCCTAGGCCAATGCCTCCAGGTGGAGCTCCGCCCATCCCTCCACCGCCTCCAGTTGGTAATAACACAATGGCGAATTTCACTCCTGGTACTCAGATGAATAGACTTCCCATGCCACCTCCCCCACAGGGCTTCCCAGGCCAGGGTGTCCGTCAGCCACCCCCTCCGCCACCCAATATGGGATAG 1005 52.04 MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPLEANKPQTVPAANGTVPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPPVMANGPPRPMPPGGAPPIPPPPPVGNNTMANFTPGTQMNRLPMPPPPQGFPGQGVRQPPPPPPNMG 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1919754 1922545 + Carg00955-RA Car06g00353 150089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00353 334 MobiDBLite consensus disorder prediction 307 334 - -
Car06g00353 334 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Car06g00353 334 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Car06g00353 334 Pfam Zinc-finger of C2H2 type 52 76 - -
Car06g00353 334 MobiDBLite consensus disorder prediction 219 334 - -
Car06g00353 334 MobiDBLite consensus disorder prediction 227 295 - -
Car06g00353 334 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 328 - -
Car06g00353 334 MobiDBLite consensus disorder prediction 1 21 - -
Car06g00353 334 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Car06g00353 334 SMART CactinC_cactus_3 89 214 - -
Car06g00353 334 SUPERFAMILY beta-beta-alpha zinc fingers 48 83 IPR036236 -
Car06g00353 334 Gene3D Classic Zinc Finger 46 89 - -
Car06g00353 334 Gene3D - 93 218 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g00217 Car-Chr14:1020167 Car06g00353 Car-Chr6:1919754 6.10E-08 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00353 K12826 - csv:101202831 434.876