Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00368 ATGGACAAAGCTTCCAAGCATCAGGTATCATTGAGGGGAGCGAGTGCAAAAGAAATTACGAGGGATGCTCTAGTTCAGAAGGTTATCCAGGAGAGAGAGCTACGTCAATATGCAAGAAAAGCTGCAGCTGCGGCTCTCTTTATTCAGAGAGTATGGAGGCGCTACAGAGTGACTAAGATAGCTGCTTTGCAGCTTCAAGAAAGTTGGGAGGAGTTGGTGAATAATCGTTCTGGTGCTCTGGCTGGCACGTTCATTTCCTATAATATTTTGAGACCGTTTCTCTTCTTTATCTCATCTTTTCTAAAACGACCCCGAAACATCCAGACCAGAGATATAGACTGTATGAAGAATTGCTTTACAATCCTGTTTGAAAGCATCAATTCTCCCGAATCAAAGAACAACTTTTGCTCCTTGGCCACTGGTACATCTGAAGAAAGAAGAATATGGACTTACCAATCAAGGAAACTTATTTCTGTATGCTTATTTATTCTTGTTCATTTCGACAAGTTGCAAGCAAAGGAGCAAGAAATTATTGTTACAACCTCTTTAGCCATGCGCTTGGTAGTCGTCTTCACTGATTATAATGGGTGGAAGAATGTAAATGAGAATAATCGTTTTGATACAGAAGCAGCATTGAAGGATTTAGTTCATTATCTAGGAACTTCTGAAAGTGGTCTTTACCTATCCGTCAGAAAATACATGTGTAAATTGAGTGTTATCCAATCTTCACGGACCACCAGTACCATCCAGACAAATGATTTATTTGTTATTACTGTGAGTGCAATAACTTTAGCTTTACGACCATTTCATCTAATGAATTTTGATGCAATTGGCACTACTTCGTGGGAAGGGCATCATGTGGCTGAACAGTTCTGTTTGTTTCTACTTACAATTCCCGAACTTGTTCAAAATCTGCCTCAAGTTCTTGTGCCAGCTGTAAAGCATCGATCTATCTTGCTACCATGCTTCTGGACTCTATTGGCCAAGAAAGAGACAATTTTATTGGGAATGTCTGACCTGGATCGGTTATCAGTTGATTGTGGCTCTAAGGTTGTTCCGGCAGTTGGATGGGCTCTTGCAAACATTATATGTCTGGCAGCAGGGACTGAAACTAAGGTCAAGGATTCTGGTTGGTTCAAGCAGAGTTTAGATTATGTGTTATATGTTCGTGTGGGTATCACTTTGGCAGAAAGACTTTTGGCTTTGATTGGGGATTTTGGGTGTGGTAGAAAGGAGAATCAAGATATCCAAAGTGAAAATTTAACTTCATATGAACCCTCTGATGCAGCTGTTCTCAAGAATGAAGTGGCATCCATGCCCTTAAGCACATTGCCCATTGATATGTTTAGGCCTATTTGTGAACAGAGGCATCTCACAGATCTTTTGACAATAGTAAATACAGATCTTCACTCCGAAAAAAGTACTGCACAGTCAAATAATATAGACTGTATGAAAAGCTTGAAACTGATCGATATATCATACTTTTACATGTACATGCTCAGAATATTTTCACTTTTGAATCCACCAGTTGGATCCTTACCTGTTCTTAACATGTTATCTTTTACTCCTGGGTTTCTTGTTGATTTGTGGGGAGTGTTAGAAAGTTCCCTTTTCCCCAGTGATGCCGATGAAGCTGAAGGTCCCTTTCCTGGCTCAAGTAAAATATCAAGTAAAAAGAAAGATGAAGTTTTTGGCAAAAAGCCAAAGCAAGTCAACAGGGATGGAAATAGTAAGAGGGTAACTGTCTTTCATAAGTTCACGAGCAAGTCACAACTGGGCAGTGATCATATGGACTCAGTTAAGGTTCAATCTAGTTCAAGACAGGGGGATGACGACTTACGTGATTTATGGGACATAAAATCTCTGAGTTGTGGTCCACAAGGTATTTCAAAAGATTTGTCATGTCTGCTCTATCTTTTCAGTGCCACTTATGCTCATCTGCTGTTAGTTCTAGACGACATAGAGTTCTATGAAAAACAGGCAAGATATTTCATCTCTCCCTCCATTGTTCCGTTCAGGCTGGAGCAGCAAAGGAAACTTGCATCAATGCTTAATACACTTGTGTATAATGGCTTGTCCCATGGTACTGGTCAGCAGAACACATCCCTTATGGAATCTGCAATCAGGTGCTTGCATTTGATGTATGAGAGAGATTGCAGACACCAGTTTTGTCCTCCTATGCTATGGCTTGCACCTGCTAGAACAAGTAGACCACCTGTTGCAGTTGCTGCAAGAACTCACGAAGCTTTATTAGCTAACTTACGGGCAGATGATAGTTTAACAGTTCCAACTGTAGGTTCGATTATAGCTACCACACCGCATGTGTTCCCATTTGAGGAAAGAGTTGAAATGTTCAGAGAGTTTGTCAAGATGGACAAAGTCTCCCGAAAAATGGCAGGTGAAGTTAGTGGACCTGGGTCACGATCATTTGAAATTGTAGTTCGTCGCAGCCATGTTATTGAAGATGGATTCAGACAGTTAAATTCCCTTGGGTCAAGGCTAAAATCAGCTATTCATGTTTCATTCGTTAGTGAATGTGGCCTTCCCGAGGCTGGCCAAGACTGTGGTGGATTATCCAAAGAGTTTTTAACTGATATAGCCAAAGCAGCATTTTCTCCTGAATATGGGCTGTTCTGTCAAACGTCTACTGAAGACAGGCTTCTTATCCCTAATGCATCAGCAAGATATCTCGACAATGGCATCCAGATGATTGAGTTTCTTGGTAGAGTTGTTGGGAAGGCTCTCTATGAAGGAATATTGCTTGATTACTCATTTTCGCATGTTTTTGTTCACAAGTTGTTAGGCCGGTATAGCTTCCTTGATGAGTTATCGACACTTGATCCAGAACTATACCGGAATCTCATGTATGTCAAGTCTTATGAGGGCGATGTCAAAGAACTCTCGCTGGATTTCACTGTTACTGAAGAATCATTTGGCAAGCGACATGTTATTGAGCTTATACATGGTGGCAAGGATGTTTCTGTTACAAATGAGAATAAGATGCAGTATGTTCACGCCATTGCTGATTATAAACTTAATCGACAGATACTGCCTTTTTCAAACGCATTCTATAGGGGTTTGACTGATCTTGTATCACCGTCATGGTTGAAGTTATTTAGTGCAAGTGAATTCAATCAGTTGCTTTCCGGTGGAAACCACGACATTGACGTTGATGATTTGAGGAATAATACACGATATACAGGTGGTTACACAGAGGGCAGCCGAACTATTAGTATTTTCTGGGAGGTTATTAAGGGGTTTGAACCAAAAGATCGTTGTTTGCTTCTTAAATTTGTCACTAGTTGTTCTCGAGCTCCATTACTTGGATTCAAGTACCTGCAACCAGCTTTTACCATTCATAAGGTCTCATGTGACGTACCGATATGGGCTTCACTAGGAGGACAGGATGTTGAGCGCCTTCCGACAGCTTCCACTTGCTATAATACTCTCAAGCTCCCTACATATAAACGTTCGAGCACCTTGAGATCAAAACTTCTCTATGCGATCAATTCCAACTCCGGATTTGAACTTTCTTGA 3537 40.83 MDKASKHQVSLRGASAKEITRDALVQKVIQERELRQYARKAAAAALFIQRVWRRYRVTKIAALQLQESWEELVNNRSGALAGTFISYNILRPFLFFISSFLKRPRNIQTRDIDCMKNCFTILFESINSPESKNNFCSLATGTSEERRIWTYQSRKLISVCLFILVHFDKLQAKEQEIIVTTSLAMRLVVVFTDYNGWKNVNENNRFDTEAALKDLVHYLGTSESGLYLSVRKYMCKLSVIQSSRTTSTIQTNDLFVITVSAITLALRPFHLMNFDAIGTTSWEGHHVAEQFCLFLLTIPELVQNLPQVLVPAVKHRSILLPCFWTLLAKKETILLGMSDLDRLSVDCGSKVVPAVGWALANIICLAAGTETKVKDSGWFKQSLDYVLYVRVGITLAERLLALIGDFGCGRKENQDIQSENLTSYEPSDAAVLKNEVASMPLSTLPIDMFRPICEQRHLTDLLTIVNTDLHSEKSTAQSNNIDCMKSLKLIDISYFYMYMLRIFSLLNPPVGSLPVLNMLSFTPGFLVDLWGVLESSLFPSDADEAEGPFPGSSKISSKKKDEVFGKKPKQVNRDGNSKRVTVFHKFTSKSQLGSDHMDSVKVQSSSRQGDDDLRDLWDIKSLSCGPQGISKDLSCLLYLFSATYAHLLLVLDDIEFYEKQARYFISPSIVPFRLEQQRKLASMLNTLVYNGLSHGTGQQNTSLMESAIRCLHLMYERDCRHQFCPPMLWLAPARTSRPPVAVAARTHEALLANLRADDSLTVPTVGSIIATTPHVFPFEERVEMFREFVKMDKVSRKMAGEVSGPGSRSFEIVVRRSHVIEDGFRQLNSLGSRLKSAIHVSFVSECGLPEAGQDCGGLSKEFLTDIAKAAFSPEYGLFCQTSTEDRLLIPNASARYLDNGIQMIEFLGRVVGKALYEGILLDYSFSHVFVHKLLGRYSFLDELSTLDPELYRNLMYVKSYEGDVKELSLDFTVTEESFGKRHVIELIHGGKDVSVTNENKMQYVHAIADYKLNRQILPFSNAFYRGLTDLVSPSWLKLFSASEFNQLLSGGNHDIDVDDLRNNTRYTGGYTEGSRTISIFWEVIKGFEPKDRCLLLKFVTSCSRAPLLGFKYLQPAFTIHKVSCDVPIWASLGGQDVERLPTASTCYNTLKLPTYKRSSTLRSKLLYAINSNSGFELS 1178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2021482 2032575 - Carg00940-RA Car06g00368 150104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00368 1178 Pfam HECT-domain (ubiquitin-transferase) 865 1178 IPR000569 GO:0004842
Car06g00368 1178 ProSiteProfiles HECT domain profile. 834 1178 IPR000569 GO:0004842
Car06g00368 1178 MobiDBLite consensus disorder prediction 544 575 - -
Car06g00368 1178 MobiDBLite consensus disorder prediction 555 575 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00368 Car-Chr6:2021482 Car17g00357 Car-Chr17:2273875 1.37E-100 dispersed
Car06g00368 Car-Chr6:2021482 Car06g00604 Car-Chr6:3464943 1.87E-55 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00368 K10588 - csv:101205886 2006.49