Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00370 ATGGAGTGGGCCACCGGAAGTTTCAGACCCTTTGTTTCTCGAGCGCCGGAATCTTCATTTGGGTTTCTCTATAACTATAATCTTGAACAGTATCAGGGCATAGATGTGAAGCATTCGGCGATGGCGGGGGCGTCGGAGACGGTGCTGCAAGGGCTGGTTCCAGGGATGGACATGAACAGCTATGGAAATTTGGAGAAGAAGAAGCGGCTGAGCAGCGAGCAGCTCGACTCACTCGAACAAAGCTTCCAGGAGGAGATCAAGCTCGATCCCGACCGGAAGCAGAAGCTGGCCAAGGAGCTTGGTCTGCAGCCGCGCCAGATCGCTGTTTGGTTTCAGAACCGCCGTGCGCGGTGGAAGGCGAAGCAACTCGAGCACCTCTACGACACTCTCAAACAAGAGTTCGATGCCATTTCTAGAGAGAAACATAAGCTTCAAGAGGAGGTAATGAAGCTGAAAAGCATGCTGAGAGAGCTTCAAACTGCGAGGAACCAAGTGTCAACGGTGTACACTGAATTGTCGGGGGAGGAGACGGTGGAGAGCACCTCGGTCGGAGCTGGCTGCTCGAGCAAGCCGAGTGGGGCGGCGGTGGCAGCAGCAGCAGCGAACCAATACCCGACGCCACCGGAGCAGTGCAACTATGTGTTCAACACTGAGGAGTACAACCCCATGTCTCCAACATTCTGGGGGACACTCCCATCGTCTTATCATCCCCAGTAA 717 54.67 MEWATGSFRPFVSRAPESSFGFLYNYNLEQYQGIDVKHSAMAGASETVLQGLVPGMDMNSYGNLEKKKRLSSEQLDSLEQSFQEEIKLDPDRKQKLAKELGLQPRQIAVWFQNRRARWKAKQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRELQTARNQVSTVYTELSGEETVESTSVGAGCSSKPSGAAVAAAAANQYPTPPEQCNYVFNTEEYNPMSPTFWGTLPSSYHPQ 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2036782 2038374 - Carg00938-RA Car06g00370 150106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00370 238 Coils Coil 61 81 - -
Car06g00370 238 Pfam Homeobox associated leucine zipper 121 155 IPR003106 GO:0006355|GO:0043565
Car06g00370 238 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Car06g00370 238 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Car06g00370 238 Coils Coil 113 164 - -
Car06g00370 238 Pfam Homeodomain 66 119 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car03g01067 Car06g00370 CCT
Car06g00370 Car14g00235 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00370 Car-Chr6:2036782 Car04g01684 Car-Chr4:9680977 1.71E-29 dispersed
Car14g00235 Car-Chr14:1099946 Car06g00370 Car-Chr6:2036782 2.23E-162 wgd
Car03g01067 Car-Chr3:8677389 Car06g00370 Car-Chr6:2036782 1.86E-49 wgd
Car06g00370 Car-Chr6:2036782 Car07g00855 Car-Chr7:4529568 6.49E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3658 PF00046 Homeodomain 1.50E-17 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00370 - - csv:101221983 436.032