Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00371 ATGGGAGCTTCGCTCTCGAACTTGAGTGAAGTGACCAATGGCTCCACCATCGGTCCTGGCCTCGGCGACATACCGGAGAGTTGTGTCGCCTGTGTTTTTCTTTACCTTACTCCGCCGGAGATTTGTAACCTCGCTCGGCTAAACAGGGCGTTTCGCGGCGCCGCTTCATCGGATGCCGTATGGGAATCGAAATTGCCCTCGAATTATCAAGATCTTCTCGATTTGTTGCCCCCCGAACGGTACCAAAATCTGTCCAAAAAGGATATCTATGCTCTGCTATCTCGTCCAGTTCCATTCGATGGTGGAAATAAGGAGGTGTGGCTGGATAGAATCACTGGAAGGATTTGCATGTCGATATCAGCTAAGGCCATGGCTATTACTGGAATTGATGACAGAAGATACTGGAATTGGATTCCCACTGAAGAGTCTCGGTTCAATGTTGTGGCATATCTGCAGCAAATTTGGTGGTTTGAAGTAGATGGGATGGTAAAATTCCCATTTCCTGCTGATATCTATACACTGACCTTCAGACTTCACCTTGGAAGGTTTTATAAGCGGCTTGGTCGACGTACATGCAGCTTCGAGCATACTCACGGTTGGGGCGTAAAGCCAGTACGGTTTGAAATGTCTACTTCTGATGGACAGCAAGCAACGCATGAATTCTGTTTAGACGAGCACGGGTTTATTGATGTAAGTGGACACCGTAAGCGTGGGTGTTGGATAGAATACAAGGTAGGCGAATTTTTGGTCGACAAGTCGGGATCAGCCACGGAAATAAGATTTTCCATGAAACAGATTGACTGCACGCATTCGAAAGGCGGGCTTTGTGTAGATTCTGTATTTATCGTTCCGAGTATCTTGAAAGATCGTAAAAAATGA 879 46.64 MGASLSNLSEVTNGSTIGPGLGDIPESCVACVFLYLTPPEICNLARLNRAFRGAASSDAVWESKLPSNYQDLLDLLPPERYQNLSKKDIYALLSRPVPFDGGNKEVWLDRITGRICMSISAKAMAITGIDDRRYWNWIPTEESRFNVVAYLQQIWWFEVDGMVKFPFPADIYTLTFRLHLGRFYKRLGRRTCSFEHTHGWGVKPVRFEMSTSDGQQATHEFCLDEHGFIDVSGHRKRGCWIEYKVGEFLVDKSGSATEIRFSMKQIDCTHSKGGLCVDSVFIVPSILKDRKK 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2043572 2046976 - Carg00937-RA Car06g00371 150107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00371 292 PANTHER F-BOX DOMAIN, PHLOEM PROTEIN 2-LIKE PROTEIN-RELATED 1 289 - -
Car06g00371 292 PANTHER F-BOX PROTEIN PP2-A15 1 289 - -
Car06g00371 292 SUPERFAMILY F-box domain 8 91 IPR036047 GO:0005515
Car06g00371 292 Pfam Phloem protein 2 115 284 IPR025886 -
Car06g00371 292 ProSiteProfiles F-box domain profile. 18 64 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00371 - - - csv:101206359 576.63
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g00371 Car14g00236 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00371 Car-Chr6:2043572 Car16g00960 Car-Chr16:8000792 2.31E-104 dispersed
Car14g00236 Car-Chr14:1105110 Car06g00371 Car-Chr6:2043572 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1066 Blo01g01214 . Bda01g00379 . . Bpe03g01258 . Bma10g00068 Cmo06g00429 Cmo14g00248 . . . . . . Cpe08g01056 . . . . . . . . . . . . . . . . Cone13ag1222 Cone19ag1208 . . . Cme04g02448 Blo07g01367 . . Bda05g01194 . Bpe02g00745 . . Sed02g0580 . . Cma06g00432 Cma14g00257 Car06g00371 Car14g00236 Cpe03g00224 . Bhi11g01999 Tan08g1792 Cmetu06g1349 . Hepe05g0325 . . Cla10g01856 Cam10g1912 Cec10g1967 Cco10g1940 Clacu10g1928 Cmu10g2672 Cre10g2061 Lsi03g01952 Csa03g03361 Chy04g01981 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004482 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00371 Car_Chr06 FPKM 20.800346 21.686054 15.343917 16.20989 4.017182 4.287831 3.335668 10.870418 10.416291 11.523427