Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00378 ATGCATATTCAGTTCTGTGCTGGCTCTATGTGTTTCCACGACTCAGTGCTATTGATATGTCGTGCAGGTGCTGAGGTTAAAGCTGGAGAACCTCTCTTGGTGAGTCCCGGAGAGGAGAATATATTGCATCTGTCGCAGGCATGCCTTGGAGAGTCCAAGAGCAAAGGAAGTGAACAGGTTTTTCTGTATGTCAAGGTCGGCAATCAAAAGCTTGTTCTGGGGACATTATCCTCAGAGAAATTCCCACAAGTTTCTTTTGATCTGGTGTTTGACAAAGACTTTGAGCTATCTCATAATTGGAAAAATGGAAGCGTCCACTTTACGGGATATTTATCCCTCCTTCCAGAAGAATATCCTTTCTCTGAGTTCCTAAATAATTTTAATACTGATTCTGAAGAGGATCTTCCACAAGCTGTCATTGACAATGGAAAACCAGAGCCACAGCCACAACCACAGCCTAAGAAAGATGAAAAGCCTGGTACTTCTGGAACGAAGAAAAAAGTGCAGATTGTAGAACCAAACAAAGGTGGCTCTATTGACACTAAGAAGAATGAAGACAGTTCTGACGAAGATGATGATGAGGATGAAGACAGCTCGGATGACGAGAATGCAAATGGAGGTGAAGAAGACGACAGTGATGATGAAAATGAATTTTCTGGGGATGACAGTGATGATGACGATGAAAATGAAGACTTGGATGACAGTATGGAAGAGGATGAGCAGACACCAAAAAAGGCCGAAGCAAGCAAGAAGAGGCCTTTAGAGGCTGCTAATAAAGCGCCTGCTCCTGATAAGAAGACAAAACTCGTCACTCCCCAGAAAACTGATGGCAAGAAAGGCGTTCCTCATGTAGCTACTCCTCATCCTTCAAAACAGGCTGGGAAAATGCCTGCTGCTAGTGACCAAAATAAACAGCAGACTCCCAAATCAGCTAGTGGTGCATTCCCCTGCAAGTCTTGCAAGAGGGCATTTGGCTCAGAAACTGCGTTACAATCCCACACAAAGGCTAAGCACAGTGCTGAGAAGTGA 1029 44.22 MHIQFCAGSMCFHDSVLLICRAGAEVKAGEPLLVSPGEENILHLSQACLGESKSKGSEQVFLYVKVGNQKLVLGTLSSEKFPQVSFDLVFDKDFELSHNWKNGSVHFTGYLSLLPEEYPFSEFLNNFNTDSEEDLPQAVIDNGKPEPQPQPQPKKDEKPGTSGTKKKVQIVEPNKGGSIDTKKNEDSSDEDDDEDEDSSDDENANGGEEDDSDDENEFSGDDSDDDDENEDLDDSMEEDEQTPKKAEASKKRPLEAANKAPAPDKKTKLVTPQKTDGKKGVPHVATPHPSKQAGKMPAASDQNKQQTPKSASGAFPCKSCKRAFGSETALQSHTKAKHSAEK 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2072870 2077085 - Carg00930-RA Car06g00378 150114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00378 342 MobiDBLite consensus disorder prediction 238 262 - -
Car06g00378 342 ProSiteProfiles Zinc finger C2H2 type domain profile. 315 342 IPR013087 -
Car06g00378 342 MobiDBLite consensus disorder prediction 186 237 - -
Car06g00378 342 ProSitePatterns Zinc finger C2H2 type domain signature. 317 338 IPR013087 -
Car06g00378 342 MobiDBLite consensus disorder prediction 137 315 - -
Car06g00378 342 Pfam Nucleoplasmin-like domain 23 111 IPR041232 -
Car06g00378 342 MobiDBLite consensus disorder prediction 296 313 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01139 Car-Chr2:7804935 Car06g00378 Car-Chr6:2072870 2.41E-27 wgd
Car20g00490 Car-Chr20:2724031 Car06g00378 Car-Chr6:2072870 3.29E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3661 PF17800 NPL 8.50E-12 CL0055 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00378 - - csv:101207572 419.083