Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00388 ATGGAAATGGAGAGCTCGCGGAGACCTTTCGATCGAACGAGGGAACCGGGTTTGAAGAAGCAGCGACTGGCCGATGAGGCTGAGCGCGGTGGGAACATTAATGGCCGGCCGTTTCCGCAGAGACCAATTGGTTCGGGGACCAATATTGTGCAACCCAGATTTCGAGCAAGTGATAGAGATTCGGGAAGCAGTGATTCTGGTCGAGGGGGGTATCAGCCTCAACCACTGCAGCATCAGGAGCTTGTCAGCCAATACAGAACAGCCCTTGCTGAGCTGACTTTCAATTCGAAACCAATCATCACCAATTTGACCATAATCGCGGGTGAAAATCTCCAGGCTGCAAAAGCCATCTCTGCCACCGTTTGCGCCAACATTCTCGAGGTTTCCAGTGAGCAGAAGCTACCATCACTTTATCTATTGGACAGTATTGTGAAGAATATTGGAAGAGACTACATAAAATACTTTGCATCAAAGCTGCCCGAGGTATTCTGCAAAGCTTATAGGCAAGTTGACTCTCCTGTACATACAAGTATGAGACATCTTTTTGGCACCTGGAAAGGAGTGTTTCCTCCTCAAACACTGCAGGTTATCGAGAAAGAACTTGGCTTCATAACCAACAGTGGTTCTTCTTCTGGGACCATATCCTCAAAGCCAGAATTGCAGTCACAACGTCCACCCCATAGTATCCATGTAAATCCCAAGTATATAGAGAGACAACGGCTTCAACAGTCGGGCAGGGTGAAAGGAATGACTAGTGATGCTACTATTGCAACTACAAATGTAACTCAGGATGTTGCCCAAGCCAAAATTAGCACTGGACGTCCATGGGCAGATGCTTCAATTAAAGTGCATGACATTCAGCGTCCACTTAGAGATGCACCAAATGATATAGCACAAGAGAAGAACATCACGGCTGCATATGCAGATTATGAATATGGTTCCGATCTTTCAAGGACTCCAGGTATCGGAAGAAGGGCTGTTGATGAAGGGCGAGACAAACCCTGGTCTACAACTGGTAGCAATTTGGCAGAGAAGTTATCTGGCCAAAGAAATGGGTTCAACATCAAGCTTGGATATGAAAATTATCCTGCACCCAGGTCTGCAAACACTGGTGCACGTCTACTGCCCACACAAAATTTTTCAAGCAGCAGCAGCAACCGAGGATTGTCTACTAACTGGAAGAACTCTGAGGAAGAGGAGTTTATGTGGGGTGAAATGAACTCTATGTTGACAGGTCATGGTGCATCTGCCATTGCCAGTAGCATTGGGAAAGATCAATGGACTCCTGAGGATTCAGATAATTCGGGTATTGAAAATAAGCTATTAAGTTTACGAGATACTGGGGGAAGTGTTGATAGAGAAGCTTCCAGTGATTCACAATCATCTGAGCAGAGAGAACTGGGGGATTCTGGACAGCAAAGGTCATCAATGTGGCAAGTGCAGGAGCCATTATCTCTGGATGGGCTGAGAGGCGGGATTCCTAAAAAGAATTCAGCTCAGTCAGGAGGATATGGTGCCACTCTTACTGCCCTGTCAGGTGGTAACTCTTCTGTGGATCAAATGGGAGGTCGACCACAAATTACATCGTCGAATATTGGAGCTTCAGGACATGAATTTCTGAACAAGGGAGGTTCAGGGTCCATTGGGACTGTAGGCCAGCAAATATTTCCATCACGAAATGTTGCATTCGCATCTGGACAGCCACCCTTGCATCAACGTCCCCCTTCACCATTGTCAGTGGATCATATTCCTCATCAAATGCCCAACCATAAAACTTCTTCATTTTCTAATCTTGACCCACGTAAAAGGCATTTACAGGATGCTTCCCTTGGTCGGCATCCCAACGTTCAGTCAGATAACCTTAAAAAACCACAGCCTCAGGACCGTCAAGCTGCAGCCTCCTCCATACCTACTTCTCAACCCAGGCAGCCGTTCTCTTTATCTGAGTCACTAAAACCTGATGTTAGGCAGTCCGAACTTTTAAGACAGCATGCAGTATCTATTCCAGGCACTGATTTTGGACCTCCTTCATCAGCTGGGACAGTTCCAGTTCGTTTACCTGCAGAAATTTTGGGAGAGACGAGCACTAGTAGTTTGTTGGCTGCTGTAATGAAGAGTGGAATTTTTTCCAACCATTCAATAGCCAGTAGCATGCAGCAGAATATCAGCTTCCAAGATGCAGGAAATATGCAACCCCATTCAAACGTCAAACCTCCACTACCAAGCCGGTCTTCTCCTGCCCATACTCAGACGACATTCTCAGAGCCAAAGACTGCGGGAGAATCTTCATTAGGTCCTCTTGAAAGCCCGTCAGCTCTGGTTAAGCTATCTCAAACTAAGGTAGAAGATACTCCGTTGCCATCTGATCCACCTTCACCCTCATCTCCTATGAATAGTGCATCCACGGAAACTTCAAATGTGGTAAACGACTCTTCTACCCCAATTTCTAACCTTTTGAGCTCATTGGTTGCAAAGGGCCTTATATCTGCTTCAAAAGGAGAGTTAACAAATAGTGCGACTTCCCAAATGCCTGCGCAGCCTGAAAATTTGAAGTTAGGTGATGCTGTGGCATGTTCTGTACCAGTTCCTTCCATCCCCGTTACTTCTTCCAGTCAATCATCTACGATACTTGAATCATCTTCAAAAGCTGCTGCTAAGAGCTCCACTAGTCCACCTCCATTTGCCACAACTGAGATAACCAACCTCATAGGCTTTGAATTTAGTTCACATGTTATTCGAAAATTTCAGCCATCTGTGATCAGTGGACTCTTTGACGATATTCCATATCAATGTAAGATCTGTGGTCTGAGACTGAAACTTGAAGAACAGTTGGATACACACTTGCAGTGGCACACGTTAAGAACTGAGGCAAACAATTCAAATAGGACACCAAGAAGATGGTATCCAAGTTCAGATGATTGGATTTCTGGAAATGATATACTCTTACATGATGCTGCCACTTCTCCGGACAGGTGTGACATGATGGAAGAAGTTAATGAGCCAATGGTACCTGCAGATGAAGATCATTTGGTCTGTGTTTTATGTGGTGAACTTTTTGAAGATTTTTATAGTCATGACTTGGATAAGTGGATGTTCAAAGGAGCAATGTATATCACCATCCCATCAGCGGTTAGTGAGATAGGAAGCACAATTGAACAAGTTGCTAGAGGACCCATCGTTCACACAAAATGTATAACTGAAAGTTCACTACATGACTTGGGACTGGCAACTGATATTAAGATGGAAATGGATGTATGA 3258 45.0 MEMESSRRPFDRTREPGLKKQRLADEAERGGNINGRPFPQRPIGSGTNIVQPRFRASDRDSGSSDSGRGGYQPQPLQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLQAAKAISATVCANILEVSSEQKLPSLYLLDSIVKNIGRDYIKYFASKLPEVFCKAYRQVDSPVHTSMRHLFGTWKGVFPPQTLQVIEKELGFITNSGSSSGTISSKPELQSQRPPHSIHVNPKYIERQRLQQSGRVKGMTSDATIATTNVTQDVAQAKISTGRPWADASIKVHDIQRPLRDAPNDIAQEKNITAAYADYEYGSDLSRTPGIGRRAVDEGRDKPWSTTGSNLAEKLSGQRNGFNIKLGYENYPAPRSANTGARLLPTQNFSSSSSNRGLSTNWKNSEEEEFMWGEMNSMLTGHGASAIASSIGKDQWTPEDSDNSGIENKLLSLRDTGGSVDREASSDSQSSEQRELGDSGQQRSSMWQVQEPLSLDGLRGGIPKKNSAQSGGYGATLTALSGGNSSVDQMGGRPQITSSNIGASGHEFLNKGGSGSIGTVGQQIFPSRNVAFASGQPPLHQRPPSPLSVDHIPHQMPNHKTSSFSNLDPRKRHLQDASLGRHPNVQSDNLKKPQPQDRQAAASSIPTSQPRQPFSLSESLKPDVRQSELLRQHAVSIPGTDFGPPSSAGTVPVRLPAEILGETSTSSLLAAVMKSGIFSNHSIASSMQQNISFQDAGNMQPHSNVKPPLPSRSSPAHTQTTFSEPKTAGESSLGPLESPSALVKLSQTKVEDTPLPSDPPSPSSPMNSASTETSNVVNDSSTPISNLLSSLVAKGLISASKGELTNSATSQMPAQPENLKLGDAVACSVPVPSIPVTSSSQSSTILESSSKAAAKSSTSPPPFATTEITNLIGFEFSSHVIRKFQPSVISGLFDDIPYQCKICGLRLKLEEQLDTHLQWHTLRTEANNSNRTPRRWYPSSDDWISGNDILLHDAATSPDRCDMMEEVNEPMVPADEDHLVCVLCGELFEDFYSHDLDKWMFKGAMYITIPSAVSEIGSTIEQVARGPIVHTKCITESSLHDLGLATDIKMEMDV 1085
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2115068 2122450 + Carg00920-RA Car06g00388 150124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00388 1085 ProSiteProfiles CID domain profile. 77 205 IPR006569 -
Car06g00388 1085 MobiDBLite consensus disorder prediction 208 228 - -
Car06g00388 1085 MobiDBLite consensus disorder prediction 563 655 - -
Car06g00388 1085 MobiDBLite consensus disorder prediction 1 75 - -
Car06g00388 1085 MobiDBLite consensus disorder prediction 321 341 - -
Car06g00388 1085 MobiDBLite consensus disorder prediction 726 812 - -
Car06g00388 1085 MobiDBLite consensus disorder prediction 371 393 - -
Car06g00388 1085 MobiDBLite consensus disorder prediction 368 393 - -
Car06g00388 1085 MobiDBLite consensus disorder prediction 453 477 - -
Car06g00388 1085 MobiDBLite consensus disorder prediction 611 653 - -
Car06g00388 1085 MobiDBLite consensus disorder prediction 444 477 - -
Car06g00388 1085 MobiDBLite consensus disorder prediction 726 759 - -
Car06g00388 1085 Pfam CID domain 87 195 IPR006569 -
Car06g00388 1085 ProSiteProfiles Zinc finger C2H2 type domain profile. 929 956 IPR013087 -
Car06g00388 1085 MobiDBLite consensus disorder prediction 208 229 - -
Car06g00388 1085 MobiDBLite consensus disorder prediction 795 812 - -
Car06g00388 1085 MobiDBLite consensus disorder prediction 1 29 - -
Car06g00388 1085 ProSitePatterns Zinc finger C2H2 type domain signature. 931 951 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g00388 Car14g00252 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00388 Car-Chr6:2115068 Car13g00585 Car-Chr13:7670583 5.30E-32 dispersed
Car14g00252 Car-Chr14:1172867 Car06g00388 Car-Chr6:2115068 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00388 K14400 - csv:101223169 1667.13