Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car06g00395	ATGGCTACTTCCGGCCGCCACCCCATTTACCGAGGCGTACGACGCCGCAACACAGGCAAATGGGTGTCGGAAATTCGGGAGCCCCGGAAGCCAAATCGGATTTGGTTGGGAACCTTCCCGACAGCTGAAATGGCGGCTGTGGCTTATGACGTTGCTGCCCTTGCTCTCAAGGGCCACGACACTCACCTCAATTTCCCCAATTCTGCGTCCTCTCTCCCTGTTCCTGCTTCACGTTCACCCTCTGATATTCAGGCTGCAGCCGCCTCTGCCGCCGCTGCGCTTGGTGCCGCAGCAGCCGCCATCGAGGCAAGGAGTGGTTTTCACGGTGGCCGTAGTAATGATCCAGGGGAAGTGGGAAATCATTTCATGGACGAGGACTTGATTTTTGATATGCCTAATGTTCTAATGAATATGGCGGAAGGAATGCTTCTTAGCCCTCCCCGTTTCAATAATCATGGTGGCGATGACGACGGAGCCGATCATGGTACCGGAAACCTTTGGAATTTTTCCTAA	513	54.39	MATSGRHPIYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGHDTHLNFPNSASSLPVPASRSPSDIQAAAASAAAALGAAAAAIEARSGFHGGRSNDPGEVGNHFMDEDLIFDMPNVLMNMAEGMLLSPPRFNNHGGDDDGADHGTGNLWNFS	170

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
6	2176750	2177262	+	Carg14515-RA	Car06g00395	150131

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car06g00395	170	ProSiteProfiles	AP2/ERF domain profile.	9	66	IPR001471	GO:0003700\|GO:0006355
	Car06g00395	170	PRINTS	Ethylene responsive element binding protein signature	10	21	IPR001471	GO:0003700\|GO:0006355
	Car06g00395	170	PRINTS	Ethylene responsive element binding protein signature	32	48	IPR001471	GO:0003700\|GO:0006355
	Car06g00395	170	CDD	AP2	8	68	IPR001471	GO:0003700\|GO:0006355
	Car06g00395	170	SUPERFAMILY	DNA-binding domain	9	68	IPR016177	GO:0003677
	Car06g00395	170	MobiDBLite	consensus disorder prediction	149	170	-	-
	Car06g00395	170	Gene3D	AP2/ERF domain	9	68	IPR036955	GO:0003700\|GO:0006355
	Car06g00395	170	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	3	169	-	-
	Car06g00395	170	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024	3	169	-	-
	Car06g00395	170	SMART	rav1_2	9	72	IPR001471	GO:0003700\|GO:0006355
	Car06g00395	170	Pfam	AP2 domain	8	59	IPR001471	GO:0003700\|GO:0006355

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Car06g00395	Car14g00258	CST

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Car06g00395	Car-Chr6:2176750	Car15g01085	Car-Chr15:8516066	1.49E-36	dispersed
	Car14g00257	Car-Chr14:1207041	Car06g00395	Car-Chr6:2176750	7.00E-72	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	3664	PF00847	AP2	8.30E-13	CL0081	Car	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car06g00395	-		-	csv:101203380	233.417