Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car06g00468 | ATGAACGATTTGTTCTCCTCTCGCTCTTTCTCTCGCGACAGCCATGTCGTTGAGATGGGTATCTCCTCCTCTTCCCCTACGGCTGCTAATCTCGACAAGTTCTTTGAAGACGTTGAATCTGTGAAAGACGAACTCAAGGAGCTTGAGAAACTCTACCAGAACCTATACGACTCCCATGAACAGAGTAAGACGCTTCACAATGCTAAGGCTGTTAAGGACCTCCGATCTCGCATGGATTCTGATGTTTCCCTTGCTCTCAAGAAGGCTAAGCTCATTAAGGTCCGATTGGAGGCGCTTGATCGCTCCAATGCCTCCAATCGGACCCAACCTGGCTGCGGCCCTGGATCGTCCTCTGACCGGACTCGGACTTCTGTGCTCAGTGGGTTGAGGAAGAAATTGCAGGATTCGATGGAGGGGTTCAATAATTTGAGGCAACAAATCTCTTCTGAGTATAGGGAGACCGTGCAGCGAAGGTATTTCACTGTTACCGGTGAAAATCCGGATGAGAAAACCATTGATATCTTGATATCTACAGGGGAAAGCGAGACATTCTTGCAGAAAGCCATTCAAGAACAAGGAAGAGGCAGAATCTTAGACACCATTAGCGAGATCCAGGAGAGGCATGATGCAGTGAAAGACCTGGAAAGGAATCTGAAGGAGCTGCACCAGGTTTTCATGGACATGGCGGTTTTGGTACACGAACAAGGCGAAAAACTCGACGACATCGAGAGCCATGTGAACAGAGCTCATTCTTTTGTTCGTGGTGGCACACAGGAGTTGTCAAAAGCAAGAGTATACCAGAAAAGCACTCGTAAATGGACGATTATTGGCATTATCATTTTGCTCATCGTTGCCTTGATCATTATCCTCAGCCTGCGCCCTTGGACTTGGAATGGTGGTAATAGTAGTGGCTCTACTCCAGCCACCTCAACTCCAACCCCCTCAGCCCCAACTCCTCCAACCCCCTGA | 969 | 48.61 | MNDLFSSRSFSRDSHVVEMGISSSSPTAANLDKFFEDVESVKDELKELEKLYQNLYDSHEQSKTLHNAKAVKDLRSRMDSDVSLALKKAKLIKVRLEALDRSNASNRTQPGCGPGSSSDRTRTSVLSGLRKKLQDSMEGFNNLRQQISSEYRETVQRRYFTVTGENPDEKTIDILISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLERNLKELHQVFMDMAVLVHEQGEKLDDIESHVNRAHSFVRGGTQELSKARVYQKSTRKWTIIGIIILLIVALIIILSLRPWTWNGGNSSGSTPATSTPTPSAPTPPTP | 322 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 2592637 | 2594098 | + | Carg16220-RA | Car06g00468 | 150204 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car06g00468 | 322 | MobiDBLite | consensus disorder prediction | 102 | 124 | - | - | |
| Car06g00468 | 322 | Coils | Coil | 204 | 224 | - | - | |
| Car06g00468 | 322 | MobiDBLite | consensus disorder prediction | 302 | 322 | - | - | |
| Car06g00468 | 322 | Pfam | SNARE domain | 237 | 289 | IPR000727 | - | |
| Car06g00468 | 322 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 201 | 263 | IPR000727 | - | |
| Car06g00468 | 322 | Pfam | Syntaxin | 33 | 236 | IPR006011 | GO:0016020 | |
| Car06g00468 | 322 | ProSitePatterns | Syntaxin / epimorphin family signature. | 207 | 246 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Car06g00468 | 322 | Coils | Coil | 31 | 58 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car06g00468 | Car-Chr6:2592637 | Car13g00552 | Car-Chr13:7435500 | 1.44E-125 | dispersed | |
| Car16g01109 | Car-Chr16:9558909 | Car06g00468 | Car-Chr6:2592637 | 9.96E-10 | dispersed | |
| Car14g00335 | Car-Chr14:1634408 | Car06g00468 | Car-Chr6:2592637 | 5.60E-162 | wgd | |
| Car06g00468 | Car-Chr6:2592637 | Car07g00809 | Car-Chr7:4283931 | 4.67E-143 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car06g00468 | K08486 | - | csv:101208931 | 504.597 |