Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00489 ATGGAGAAAACAAGTTCGTTAGGATTGGCGAGGACGAAATCCGATCAACTGTTGGAGAAGGTGGCAGCAGCATTCAAGTCACCGACGTCGAGCAGAGAGGCAAATGGGGTGGTGGGGGAGAGTGGTAGCTCGACGTTGTCGAGGAAGCCGAGCAAGCAGACGCTGACAGCTCCTTCGCCGGGGTGTGGCAGTGGCAGTGGCAGTGGGCGAAACACACATATCAGGAAGTCTAGGAGTGCACAACTGAAGCTGGATTTGGATGAGTTGGGCAGTGGTGCAGCCCTGAGTAGAGCTTCAAGTGCTAGCTTGGGCTTGTCATTCTCCTTCACTGGCTTCACACTGCCACCTGATGAAATTGCTGATTCCAAGACATTTAGTGATGAAGATATACCAGAGGATGTACAAGCAGGAACACGCAAGGCCAGATTTCAAACAGAACCAACCATGCCAATTCATCTCAAGTTCACAGATGTTACTTATAAAGTAATTATAAAAGGACTGCGGACAAATGTGGAGAAGGAGATCCTGAACGGGATTACCGGTTTGGTACACCCAGGCGAAGTTCTGGCCTTAATGGGACCTTCTGGAAGTGGCAAGACAACATTACTCAATCTGCTCGGAGGGCGGCTCATACGATCTACAGTTGGTGGTTCAATTACCTACAATGATCAACCATACAATAAGTTCCTGAAAAGCAGGATAGGATTCGTGATGCAGGAGGATGTTCTATTTCCCCACTTGACAGTGAAAGAAACATTGAGATATGCAGCTTTGCTACGACTGCCAAGAACATTGACAAAAGAGCAAAAGGAAAAGCGTGCTATGGACATTATCTATGAGCTGGGCCTTGAAAAGTGCCAGGATACAATGATTGGTGGCTCCTTCGTCCGTGGGGTTTCGGGTGGAGAAAGGCGTCGGGTCTGTATAGGCAATGAGATCTTAATCAACCCCTCTCTCCTCTTTCTTGATGAACCAACCTCAGGCTTGGATTCTACAACTGCATTGAGAATTGTTCAGATTTTACATGAGATAGCTGAAGCTGGGAAGACCGTGGTGACAACGATTCACCAACCATCAAGCAGACTATTCCACAACTTCGACAAGCTAATTCTTCTTGGGAAGGGAAACTTAATCTACTATGGAAAAGCAGCAGAAGCAATGAACTATTTCTCATCTATAGGATGTTCCCCACTTATTGCAATGAATCCTGCTGAGTTCTTGCTTGACCTTGCAAATGGCAACCTCAATGATGTGTCTGTTCCATCAGAGCTAGAGGATAAGGTGCAAGTAGAGAATTCTGAGCCTGACAGTAGGCTCGATAGGCCTTCTCCAGCTCTTGTGCAGGAGTATCTTGTGGAGGCTTACGAGACGAGAGTTGCAGAGAAGGAAAAGAGGAAGATGCTCGCACCTCTAATGCTCGACGAAGAGCTGAAATCGAAGGTGAAGTCTTCGAAAAGGCAATGGGGAGCGAGTTGGTGGGAACAATATTCGATACTGTTCCATAGAGGAATTAAAGAAAGACGCCATGAATACTTCAGCTGGCTGAGAATCACTCAAGTTCTCGCCACCGCCGTTATCTTAGGGTTACTGTGGTGGCGATCGGAAAGTGGCACTCCAAAAGGCTTGCATGACCAGGCTGGATTGCTGTTCTTCATAGCAGTGTTTTGGGGATTCTTCCCTGTGTTTACAGCAATATTCACATTCCCTCAAGAAAGAGCAATGCTAAACAAAGAAAGAGCGGCTGATATGTACAGATTCAGCGCTTACTTTTTGGCAAGAACCACAAGTGATCTTCCGCTTGATCTTTTGTTGCCTATTCTTTTCCTTCTCGTTGTCTACTTCATGGCAGGCCTAAGGCTTAGCGCTGCTCCTTTCTTCCTCACCATGGTCACTGTCTTCCTCTGCATAGTGGCTGCTCAGGGCCTTGGCTTGGCTATTGGAGCTACACTCATGGATGTCAAGAAGGCCACGACTTTAGCCTCGGTCACCGTCATGACCTTCATGCTTGCCGGTGGATTCTTTGTACAAAAAGTTCCGGTGTTCGTGTCTTGGATTCGTTTCGTGTCATTCAACTATCACACATACAAGCTTCTCCTAAAGGTGCAGTACAACAACATCCTACCTACCGTAAAGGGTATGAAAATGGACAACGGAGTAGTCGAAGTTACTGCTCTGATCGCCATGGCTTTCGGGTATCGTCTCTTAGCTTACATTTCGTTGAGGAGGATGAAACTATCAGGAGTTTAA 2247 46.91 MEKTSSLGLARTKSDQLLEKVAAAFKSPTSSREANGVVGESGSSTLSRKPSKQTLTAPSPGCGSGSGSGRNTHIRKSRSAQLKLDLDELGSGAALSRASSASLGLSFSFTGFTLPPDEIADSKTFSDEDIPEDVQAGTRKARFQTEPTMPIHLKFTDVTYKVIIKGLRTNVEKEILNGITGLVHPGEVLALMGPSGSGKTTLLNLLGGRLIRSTVGGSITYNDQPYNKFLKSRIGFVMQEDVLFPHLTVKETLRYAALLRLPRTLTKEQKEKRAMDIIYELGLEKCQDTMIGGSFVRGVSGGERRRVCIGNEILINPSLLFLDEPTSGLDSTTALRIVQILHEIAEAGKTVVTTIHQPSSRLFHNFDKLILLGKGNLIYYGKAAEAMNYFSSIGCSPLIAMNPAEFLLDLANGNLNDVSVPSELEDKVQVENSEPDSRLDRPSPALVQEYLVEAYETRVAEKEKRKMLAPLMLDEELKSKVKSSKRQWGASWWEQYSILFHRGIKERRHEYFSWLRITQVLATAVILGLLWWRSESGTPKGLHDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLNKERAADMYRFSAYFLARTTSDLPLDLLLPILFLLVVYFMAGLRLSAAPFFLTMVTVFLCIVAAQGLGLAIGATLMDVKKATTLASVTVMTFMLAGGFFVQKVPVFVSWIRFVSFNYHTYKLLLKVQYNNILPTVKGMKMDNGVVEVTALIAMAFGYRLLAYISLRRMKLSGV 748
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2702294 2708157 - Carg16241-RA Car06g00489 150225

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00489 748 Pfam ABC transporter 176 327 IPR003439 GO:0005524
Car06g00489 748 ProSitePatterns ABC transporters family signature. 299 313 IPR017871 GO:0005524
Car06g00489 748 MobiDBLite consensus disorder prediction 28 75 - -
Car06g00489 748 MobiDBLite consensus disorder prediction 24 78 - -
Car06g00489 748 SMART AAA_5 185 376 IPR003593 -
Car06g00489 748 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 153 399 IPR003439 GO:0005524
Car06g00489 748 Pfam ABC-2 type transporter 495 703 IPR013525 GO:0016020|GO:0140359
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00489 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - csv:101213089 1293.1
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g00489 Car14g00350 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00489 Car-Chr6:2702294 Car16g00916 Car-Chr16:7506194 2.85E-175 dispersed
Car20g00075 Car-Chr20:397340 Car06g00489 Car-Chr6:2702294 7.88E-67 dispersed
Car04g01598 Car-Chr4:9239197 Car06g00489 Car-Chr6:2702294 8.14E-172 transposed
Car14g00350 Car-Chr14:1706437 Car06g00489 Car-Chr6:2702294 0 wgd
Car18g00896 Car-Chr18:9828508 Car06g00489 Car-Chr6:2702294 2.40E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g968 . . . . . Bpe07g00048 . . Cmo06g00554 Cmo16g00550 . . . . . Cpe14g00425 . . . . . . . . . . . . . . . . . . Cone9ag0341 . . . . . . . . . . . Bma12g00629 . . . Cma06g00550 Cma16g00503 Car06g00489 . Cpe01g00545 . . . . . . . . . . . . . . . . Csa04g00716 . .
Vvi8g187 . . Bda01g00414 . Bpe04g01475 Bpe03g01181 Bma04g01522 Bma10g00140 Cmo06g00554 Cmo14g00380 . . . . . . Cpe08g00945 . . . . . . . . . . . . . . Cone3ag0122 Cone10ag0105 . Cone19ag0443 . . . . . Blo09g00453 Bda03g01617 Bda05g01118 . Bpe02g00689 Bma01g02025 . . . . Cma06g00550 Cma14g00381 Car06g00489 Car14g00350 Cpe03g00333 . Bhi11g02455 . . . . . . Cla10g01716 Cam10g1765 Cec10g1814 Cco10g1786 Clacu10g1782 Cmu10g2532 Cre10g1917 Lsi03g01787 Csa03g03525 Chy04g01828 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003327 3 4 3 3 3 1 2 1 1 1 1 1 2 0 1 2 1 3 2 1 1 1 1 1 1 1 1 4 1 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00489 Car_Chr06 FPKM 28.434185 34.681805 21.756626 21.497162 32.547676 32.114285 29.56966 23.23369 20.957634 23.382704