Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00535 ATGCTTCAACTCATCAACTGTTTACACAGCCGAAACGAAGACGAAGATTTCTTTCATCCAGCAACTCCCAACTTGAGGAGCAGAAGGCTGATGTTGAAATTTTCTATAAACAATTCAGCAACAAAACCTCAATCGAAGGATGATGTGAAGAATCCGAATCAGAAACCGCATAATTCGTTCGTTGATCGAACAGGTCGGCTTGTTTCTGGCCCTCAAAAGGCCTTCTCCAGCAGCGTACGCAATATCATGAAAGCGCCATTCCAACGGCTTCATAGAGATACTTGCTATTGGTCCTTTTCACGTCGCCATCACGATCTGGCTCTATCTCCAACCCTAGATACACACTTTTTGATTACGTTTGTTGTTAGTTCTAAAGTTCTTACCGGCCTAGCTGGTTGTGATATTGCTTGGACGAATTTAGGCATCTTTCTGTCTCGAAATGATCCAAACATTGGAGCAAGTATCATCATAAAGATGGAAGGAAGGGGCGTTTCAGAACTATATAGAAACGCAAGTGAGGAGCTATTTCTTAAATCTTGGGTCGAAAATGCAATCGGAATAATTGCCTCGGAGTCTGTTGAACTGTCTAGTTCTCAGTATGTGGCAAAACATCAAAAGAGAATAAGCAATGATATATTGCATCCACAAAGTGCCTCCGTGGCTGATGATGTCGCAGGAGCTAATCAACAAACTTTCAGGGATGTTGTTGATGGTGAAGGGCAAGGTAGTAACCTTTATCTTGCGAAGGCATGGTTCCACAGTTCTCAACCTATGACAAGAAGTCGATCATCTGAGCTAAGGAGGAGGTATGCTGCAATGCAAAGCAATCAAAGCTCATTCGGTATAGAGTCCATGCATGACTTGTCAGGGCATGGAGCCAACGCGATGAAACTAGATATCACAAATTCACAGAATTTCATTGACCCTTCTACTTGTGAGATTCCAAACCAGCCTGTTCAATTTGTATCCACATCCAATTCATCGGCATCAATGTTCAATGCACCAAACATGTATGATGTAGATAAAATTTCTTCTGTTGTAAACATGCTAAAGGGCACATTAGAACGGAAGAAACTAAATAACCAGATTGAAAAAGTGGCACCGGAGGATAGTTCAAATGCACGTTTTGGCAACCTTAGTTTCGATCGAAGCAGTGACAGTTATATACATCAAATACCGAACAGTCTCGAGGAATTTTCTACTGTTCAAGTTGTGGATAATAGAATTTTACAAATGTTTGAGGGATCAGCAGAGCTCGGTTTCGATGCTTTCGTATATCCTGTAAATCCCATTCAGTCAGGTAGAGTTTCTCAAGAACCTTCTCAAAGTGAATCTTCTGCTGCTGCAGCAATTTCATCCGGTTTTGAGGCGTGTGATGGTCTTAGCAACTCAACTCTAACTCATAGCAACGGTGCAAGCTCAAGGACACAAGTTACAGGCAATCAGAGCTTAAAAAATGGATCATCACGACCTAAAGAGGAGGAGTGTAATTCGTTACGGGTCCGTAACATCAGCTGCTTCAGAATGGCAGAGGCGAAGGAGAGGAATATGACACCAACTATTCCATCAGATATGCAATCAGTTCTGAAGCGGTGTGACAATCTTGAGAAGGAAGTGCGGTCACTAAAACTCAATTTGTCCTTTATGAATAGGAAGGATTCTGAGCAGACTAAGCAGATAGAGGATCTTCAGAAGCAGAATGAGGACTTAGCAAATGAAAAAGAATGCCTACTTGAAGAGATTGAGAAGATTCTCTCAGAAACTGGAAGAATGTTCTTGAGCTTGACAGCTGGAAAAGCCATCATAGTCTAA 1812 41.83 MLQLINCLHSRNEDEDFFHPATPNLRSRRLMLKFSINNSATKPQSKDDVKNPNQKPHNSFVDRTGRLVSGPQKAFSSSVRNIMKAPFQRLHRDTCYWSFSRRHHDLALSPTLDTHFLITFVVSSKVLTGLAGCDIAWTNLGIFLSRNDPNIGASIIIKMEGRGVSELYRNASEELFLKSWVENAIGIIASESVELSSSQYVAKHQKRISNDILHPQSASVADDVAGANQQTFRDVVDGEGQGSNLYLAKAWFHSSQPMTRSRSSELRRRYAAMQSNQSSFGIESMHDLSGHGANAMKLDITNSQNFIDPSTCEIPNQPVQFVSTSNSSASMFNAPNMYDVDKISSVVNMLKGTLERKKLNNQIEKVAPEDSSNARFGNLSFDRSSDSYIHQIPNSLEEFSTVQVVDNRILQMFEGSAELGFDAFVYPVNPIQSGRVSQEPSQSESSAAAAISSGFEACDGLSNSTLTHSNGASSRTQVTGNQSLKNGSSRPKEEECNSLRVRNISCFRMAEAKERNMTPTIPSDMQSVLKRCDNLEKEVRSLKLNLSFMNRKDSEQTKQIEDLQKQNEDLANEKECLLEEIEKILSETGRMFLSLTAGKAIIV 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3003021 3012260 + Carg16287-RA Car06g00535 150271

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00535 603 MobiDBLite consensus disorder prediction 40 63 - -
Car06g00535 603 PANTHER PROTEIN CYCLOPS 508 591 IPR040036 GO:0005634|GO:0036377|GO:0043565
Car06g00535 603 PANTHER PROTEIN CYCLOPS 158 192 IPR040036 GO:0005634|GO:0036377|GO:0043565
Car06g00535 603 PANTHER PROTEIN CYCLOPS 188 489 IPR040036 GO:0005634|GO:0036377|GO:0043565
Car06g00535 603 Coils Coil 525 587 - -
Car06g00535 603 MobiDBLite consensus disorder prediction 466 487 - -
Car06g00535 603 MobiDBLite consensus disorder prediction 466 495 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00535 - - - cpep:111800819 682.174
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g00535 Car16g01143 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g01143 Car-Chr16:9759405 Car06g00535 Car-Chr6:3003021 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g888 . . . . . . . . Cmo06g00607 Cmo16g01261 . . . . . Cpe14g01004 . . . . . . . . Cla10g00105 Cam10g0101 Cec10g0108 Cco10g0110 Clacu10g0105 Cmu10g0953 Cre10g0364 Cone8ag0529 . . . Lsi07g01131 . . Cme06g02410 Blo03g00843 . Bda07g00136 . . . . . . . . Cma06g00600 Cma16g01217 Car06g00535 Car16g01143 . . . . . . . . . . . . . . . . . Csa03g00105 Chy06g02200 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011056 1 0 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00535 Car_Chr06 FPKM 3.995736 4.076049 1.683524 2.237567 4.161937 4.012197 4.520384 1.892582 1.282828 1.522286