Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00537 ATGGCGCAGTTTAAGCTGACGGAAGGAGCAGTGATGATGATATGCAAGAGGGAATCGACTGCAGAGACGTTCCAGCCGGTTGTGCAAGTAATTGACTTGAAATTGGTTAACACTGCGCAACAATCGGGTAGTGAGAGGTACAGATTGTTGCTTTCTGATGGAACACATTACCAGCAAGGAATGTTGGGGACTCAGCTGAATGGATTGGTGAAGTCTGGGAAGTTGCAGAAAGGTTCCATAGTTCAACTGAAGCAATATGTCTGTAATCCCGTTCAAGAACGCTTGATTATAATTGTCATTGAGTTGGATGTGGTAGTGGAAATGTGCGAATTTATTGGCGAACCTGTACCAGCAACGAGATCAGTAACAGGTGCATTTAGTGGAAACCCCCAATCCTCTGTGGCGACTTCACCCAGTAGTGGAATAGCTGGTAAAATGAATGTATCTAGTGCATCTTCTGAACTGCCTAAAGTGAATCAATCACATGCATCGCATGTGGGAGCTTATTCAAACACTCCGGAATCTGGAAGATACACTGCGTCAATCGCACCTCCTCTTTACCCTAATAAGACAGATCCTGGAACAAGGTTTAACGGGTCATCTTCTTTAAGTGGGTCATATGGTGATCAGAAAATGGCATATCACAACAATGGATCAGATAATCCAAGGCCACCTCTAAATGCTTATGCTTGTCCTCAGCCAACATATCAGCAGCCACCTTCAATGTACAGCAACAGAGGTCCAGTAGCAAAAAACGAAGCTCCCCCAAGGATAATGCCTATTACTGCTCTGAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTTACTTCAAAAGGAGAACTTAGACACTACAATAATCCTCGTGGAGATGGGAAAGTGTTTTCATTTGATCTACTTGATGCACACCGTGGAGAAATACGAGTTACGTGTTTCAACATGGTAGCTGACCAGTTTTACAACCAGATTGAACCCGGTAAAGTTTACTTCATTTCTAAAGGAAGCTTGAAACCTGCTCAAAAGAACTTTAACCATCTCAAAAATGACTTTGAAATATTTCTTGAGAGCACATCAACAATCCAACCTTGCTTTGAGGATGACCAATCAATCCCCCAACAGCAGTTCCATTTCCATCAGATTAGTGAGATTGAAGGCATGGACAACAACAGTGTTGTAGATTTAATTGGTGTTGTTACCTCCATTAATCCTTCAACTTCTATAATGAGAAAAAATGGTATCGAGACTCAGAAGAGAACCCTTCAGTTGAAAGATATGTCTGGGCGAAGTGTTGAATTGACCCTTTGGGGAAACTTTTGTCAAGCAGAAGGGCAACGATTGCAAAATATGTGCGACTCAGGGATGTTCCCAGTCTTGGCTGTGAAATCTGGTAGGGTGAGTGACTTCAATGGGAAGGCAGTGGGAACCATTTCATCAAGTCAGCTGTCTGTAGAGCCAGATTTTCCTGAGGCTCGTACGCTGAGAGAGTGGTTTGAGAAGGAAGGGAGGAGTACTCCGTCTGTGTCTATATCGAGGGAAGTTTCTAGCATAGGCAGGACAGATGTCCGTAAGACCATATCTCAAATAAAAGATGAGAGGTTAGGAACCTCTGAGAAGCCTGATTGGATTACTGTTAGTGCAACCGTTTCATTTATTAAGGTAGACAACTTCTGTTACACAGCATGTCCTATCATGATCGGGGACCGACAATGCAGCAAAAAGGTTACAAATAATGGAGATGGAAAATGGAGATGTGACCGGTGTGATCAGTCTGTTGACGAATGTGATTACAGATACATACTCCAGCTGCAAATACAGGATCATACTGGTTTAACTTGGGTAACTGCATTTCAAGAAGGTGGTGAGGAAATCATGGGCGTACCTGCAAAAAGATTGTATTATTTGAAATACGAAGAGCAAGATGATGAGAAATTTGCAGAAATCATCCGTAAGGTTCTTTTTACAAAATTTATCATGAAGCTGAAAATAAAGGAAGAGACTTTTAGTGATGAACAGAGAGTAAGGTCAACAGTGGTGAAAGCAGAAAGCATTAATTTTTCGACTGAGTCCCGATTTCTTCTAGACTTAATGGAAAAGCTCAGGGCAGAGAACGCCAGTTCTGTTACCCCAAAGACAGAAAGCACCATACATGATCTCGGACTTCGTGGTGCCGGGAATGTTGGTGGTGGACAGTTCGTGTCACCCAGTCGAAACATTAGCAATGTTAGCAGCAGAGAATATGGTACACCAAACCTAGGTGTTCAGTATGAGAACCAATACAGCAGTTCTAGGCCTTCTCCATCCATGGTGCATAATTCACACACGTACTGCAACAGCTGCGGGGGCTCTGGTCACAGCTCGATGAACTGCCCGAGTATAACAAGTGCTCCTACGCATCCCATTGGAGGGGGAATGTATTCAAATCGATCTTCTGGCCCTTCCGGTGGTGGTGTCTCTGGGGAATGCTTCAAATGCCATCAAACTGGGCATTGGGCCAGGGATTGCCCTGGTTTGGCCGCTGTCCCTCCAGCTTATGGTAACAGTGGCTTCACGGCTAGGTAA 2562 43.95 MAQFKLTEGAVMMICKRESTAETFQPVVQVIDLKLVNTAQQSGSERYRLLLSDGTHYQQGMLGTQLNGLVKSGKLQKGSIVQLKQYVCNPVQERLIIIVIELDVVVEMCEFIGEPVPATRSVTGAFSGNPQSSVATSPSSGIAGKMNVSSASSELPKVNQSHASHVGAYSNTPESGRYTASIAPPLYPNKTDPGTRFNGSSSLSGSYGDQKMAYHNNGSDNPRPPLNAYACPQPTYQQPPSMYSNRGPVAKNEAPPRIMPITALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAHRGEIRVTCFNMVADQFYNQIEPGKVYFISKGSLKPAQKNFNHLKNDFEIFLESTSTIQPCFEDDQSIPQQQFHFHQISEIEGMDNNSVVDLIGVVTSINPSTSIMRKNGIETQKRTLQLKDMSGRSVELTLWGNFCQAEGQRLQNMCDSGMFPVLAVKSGRVSDFNGKAVGTISSSQLSVEPDFPEARTLREWFEKEGRSTPSVSISREVSSIGRTDVRKTISQIKDERLGTSEKPDWITVSATVSFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGVPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVVKAESINFSTESRFLLDLMEKLRAENASSVTPKTESTIHDLGLRGAGNVGGGQFVSPSRNISNVSSREYGTPNLGVQYENQYSSSRPSPSMVHNSHTYCNSCGGSGHSSMNCPSITSAPTHPIGGGMYSNRSSGPSGGGVSGECFKCHQTGHWARDCPGLAAVPPAYGNSGFTAR 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3018858 3022916 + Carg16289-RA Car06g00537 150273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00537 853 ProSiteProfiles Zinc finger CCHC-type profile. 822 836 IPR001878 GO:0003676|GO:0008270
Car06g00537 853 Pfam Zinc knuckle 821 836 IPR001878 GO:0003676|GO:0008270
Car06g00537 853 Pfam Replication factor-A protein 1, N-terminal domain 6 106 IPR007199 GO:0003677|GO:0005634|GO:0006260
Car06g00537 853 Pfam OB-fold nucleic acid binding domain 271 356 IPR004365 GO:0003676
Car06g00537 853 ProSiteProfiles Zinc finger CCHC-type profile. 777 792 IPR001878 GO:0003676|GO:0008270
Car06g00537 853 MobiDBLite consensus disorder prediction 128 226 - -
Car06g00537 853 MobiDBLite consensus disorder prediction 128 178 - -
Car06g00537 853 MobiDBLite consensus disorder prediction 193 223 - -
Car06g00537 853 Pfam Replication factor-A C terminal domain 542 693 IPR013955 -
Car06g00537 853 Pfam Replication protein A OB domain 381 484 IPR031657 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g00537 Car16g01142 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g01325 Car-Chr5:12060730 Car06g00537 Car-Chr6:3018858 0 transposed
Car11g00189 Car-Chr11:1080955 Car06g00537 Car-Chr6:3018858 1.80E-88 transposed
Car16g01142 Car-Chr16:9754883 Car06g00537 Car-Chr6:3018858 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00537 K07466 - csv:101211358 1466.83