Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car06g00537 | ATGGCGCAGTTTAAGCTGACGGAAGGAGCAGTGATGATGATATGCAAGAGGGAATCGACTGCAGAGACGTTCCAGCCGGTTGTGCAAGTAATTGACTTGAAATTGGTTAACACTGCGCAACAATCGGGTAGTGAGAGGTACAGATTGTTGCTTTCTGATGGAACACATTACCAGCAAGGAATGTTGGGGACTCAGCTGAATGGATTGGTGAAGTCTGGGAAGTTGCAGAAAGGTTCCATAGTTCAACTGAAGCAATATGTCTGTAATCCCGTTCAAGAACGCTTGATTATAATTGTCATTGAGTTGGATGTGGTAGTGGAAATGTGCGAATTTATTGGCGAACCTGTACCAGCAACGAGATCAGTAACAGGTGCATTTAGTGGAAACCCCCAATCCTCTGTGGCGACTTCACCCAGTAGTGGAATAGCTGGTAAAATGAATGTATCTAGTGCATCTTCTGAACTGCCTAAAGTGAATCAATCACATGCATCGCATGTGGGAGCTTATTCAAACACTCCGGAATCTGGAAGATACACTGCGTCAATCGCACCTCCTCTTTACCCTAATAAGACAGATCCTGGAACAAGGTTTAACGGGTCATCTTCTTTAAGTGGGTCATATGGTGATCAGAAAATGGCATATCACAACAATGGATCAGATAATCCAAGGCCACCTCTAAATGCTTATGCTTGTCCTCAGCCAACATATCAGCAGCCACCTTCAATGTACAGCAACAGAGGTCCAGTAGCAAAAAACGAAGCTCCCCCAAGGATAATGCCTATTACTGCTCTGAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTTACTTCAAAAGGAGAACTTAGACACTACAATAATCCTCGTGGAGATGGGAAAGTGTTTTCATTTGATCTACTTGATGCACACCGTGGAGAAATACGAGTTACGTGTTTCAACATGGTAGCTGACCAGTTTTACAACCAGATTGAACCCGGTAAAGTTTACTTCATTTCTAAAGGAAGCTTGAAACCTGCTCAAAAGAACTTTAACCATCTCAAAAATGACTTTGAAATATTTCTTGAGAGCACATCAACAATCCAACCTTGCTTTGAGGATGACCAATCAATCCCCCAACAGCAGTTCCATTTCCATCAGATTAGTGAGATTGAAGGCATGGACAACAACAGTGTTGTAGATTTAATTGGTGTTGTTACCTCCATTAATCCTTCAACTTCTATAATGAGAAAAAATGGTATCGAGACTCAGAAGAGAACCCTTCAGTTGAAAGATATGTCTGGGCGAAGTGTTGAATTGACCCTTTGGGGAAACTTTTGTCAAGCAGAAGGGCAACGATTGCAAAATATGTGCGACTCAGGGATGTTCCCAGTCTTGGCTGTGAAATCTGGTAGGGTGAGTGACTTCAATGGGAAGGCAGTGGGAACCATTTCATCAAGTCAGCTGTCTGTAGAGCCAGATTTTCCTGAGGCTCGTACGCTGAGAGAGTGGTTTGAGAAGGAAGGGAGGAGTACTCCGTCTGTGTCTATATCGAGGGAAGTTTCTAGCATAGGCAGGACAGATGTCCGTAAGACCATATCTCAAATAAAAGATGAGAGGTTAGGAACCTCTGAGAAGCCTGATTGGATTACTGTTAGTGCAACCGTTTCATTTATTAAGGTAGACAACTTCTGTTACACAGCATGTCCTATCATGATCGGGGACCGACAATGCAGCAAAAAGGTTACAAATAATGGAGATGGAAAATGGAGATGTGACCGGTGTGATCAGTCTGTTGACGAATGTGATTACAGATACATACTCCAGCTGCAAATACAGGATCATACTGGTTTAACTTGGGTAACTGCATTTCAAGAAGGTGGTGAGGAAATCATGGGCGTACCTGCAAAAAGATTGTATTATTTGAAATACGAAGAGCAAGATGATGAGAAATTTGCAGAAATCATCCGTAAGGTTCTTTTTACAAAATTTATCATGAAGCTGAAAATAAAGGAAGAGACTTTTAGTGATGAACAGAGAGTAAGGTCAACAGTGGTGAAAGCAGAAAGCATTAATTTTTCGACTGAGTCCCGATTTCTTCTAGACTTAATGGAAAAGCTCAGGGCAGAGAACGCCAGTTCTGTTACCCCAAAGACAGAAAGCACCATACATGATCTCGGACTTCGTGGTGCCGGGAATGTTGGTGGTGGACAGTTCGTGTCACCCAGTCGAAACATTAGCAATGTTAGCAGCAGAGAATATGGTACACCAAACCTAGGTGTTCAGTATGAGAACCAATACAGCAGTTCTAGGCCTTCTCCATCCATGGTGCATAATTCACACACGTACTGCAACAGCTGCGGGGGCTCTGGTCACAGCTCGATGAACTGCCCGAGTATAACAAGTGCTCCTACGCATCCCATTGGAGGGGGAATGTATTCAAATCGATCTTCTGGCCCTTCCGGTGGTGGTGTCTCTGGGGAATGCTTCAAATGCCATCAAACTGGGCATTGGGCCAGGGATTGCCCTGGTTTGGCCGCTGTCCCTCCAGCTTATGGTAACAGTGGCTTCACGGCTAGGTAA | 2562 | 43.95 | MAQFKLTEGAVMMICKRESTAETFQPVVQVIDLKLVNTAQQSGSERYRLLLSDGTHYQQGMLGTQLNGLVKSGKLQKGSIVQLKQYVCNPVQERLIIIVIELDVVVEMCEFIGEPVPATRSVTGAFSGNPQSSVATSPSSGIAGKMNVSSASSELPKVNQSHASHVGAYSNTPESGRYTASIAPPLYPNKTDPGTRFNGSSSLSGSYGDQKMAYHNNGSDNPRPPLNAYACPQPTYQQPPSMYSNRGPVAKNEAPPRIMPITALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAHRGEIRVTCFNMVADQFYNQIEPGKVYFISKGSLKPAQKNFNHLKNDFEIFLESTSTIQPCFEDDQSIPQQQFHFHQISEIEGMDNNSVVDLIGVVTSINPSTSIMRKNGIETQKRTLQLKDMSGRSVELTLWGNFCQAEGQRLQNMCDSGMFPVLAVKSGRVSDFNGKAVGTISSSQLSVEPDFPEARTLREWFEKEGRSTPSVSISREVSSIGRTDVRKTISQIKDERLGTSEKPDWITVSATVSFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGVPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVVKAESINFSTESRFLLDLMEKLRAENASSVTPKTESTIHDLGLRGAGNVGGGQFVSPSRNISNVSSREYGTPNLGVQYENQYSSSRPSPSMVHNSHTYCNSCGGSGHSSMNCPSITSAPTHPIGGGMYSNRSSGPSGGGVSGECFKCHQTGHWARDCPGLAAVPPAYGNSGFTAR | 853 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 3018858 | 3022916 | + | Carg16289-RA | Car06g00537 | 150273 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car06g00537 | 853 | ProSiteProfiles | Zinc finger CCHC-type profile. | 822 | 836 | IPR001878 | GO:0003676|GO:0008270 | |
Car06g00537 | 853 | Pfam | Zinc knuckle | 821 | 836 | IPR001878 | GO:0003676|GO:0008270 | |
Car06g00537 | 853 | Pfam | Replication factor-A protein 1, N-terminal domain | 6 | 106 | IPR007199 | GO:0003677|GO:0005634|GO:0006260 | |
Car06g00537 | 853 | Pfam | OB-fold nucleic acid binding domain | 271 | 356 | IPR004365 | GO:0003676 | |
Car06g00537 | 853 | ProSiteProfiles | Zinc finger CCHC-type profile. | 777 | 792 | IPR001878 | GO:0003676|GO:0008270 | |
Car06g00537 | 853 | MobiDBLite | consensus disorder prediction | 128 | 226 | - | - | |
Car06g00537 | 853 | MobiDBLite | consensus disorder prediction | 128 | 178 | - | - | |
Car06g00537 | 853 | MobiDBLite | consensus disorder prediction | 193 | 223 | - | - | |
Car06g00537 | 853 | Pfam | Replication factor-A C terminal domain | 542 | 693 | IPR013955 | - | |
Car06g00537 | 853 | Pfam | Replication protein A OB domain | 381 | 484 | IPR031657 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Car06g00537 | Car16g01142 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car05g01325 | Car-Chr5:12060730 | Car06g00537 | Car-Chr6:3018858 | 0 | transposed | |
Car11g00189 | Car-Chr11:1080955 | Car06g00537 | Car-Chr6:3018858 | 1.80E-88 | transposed | |
Car16g01142 | Car-Chr16:9754883 | Car06g00537 | Car-Chr6:3018858 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car06g00537 | K07466 | - | csv:101211358 | 1466.83 |