Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00540 ATGTTTACATGCATAGCATGTACGAAACAGACAGACGACGGGGGTGAGGATGGGGCTGCGCGTGGGAGTGGCACGCCTAGTACAAAGGAAGCCGTCAAAAGCCTGACAACGCAGATTAAGGACATGGCGTTGAAATTCTCTGGTGCTTATAGGCAGTGCAAACCCTGCACAGGCTCCAGTAGCTATAAGAAAGGACAGAGACCTTACCCAGATTTTGACACTGCTTCAGAAGGGGTTCCATACCCCTACATAGGAGGGGCAAGTGCAAGTTCAACACCTGCCTGGGACTTCCCTCCTGTCAATCGCCACCCACATACGAGATCTGACTCTAGATTTAAAGGGGTGTTCAGAGGAGACCAGACCCCTGGAGCCGATTCCACCATATCAGCATGTGATGTGGTGCTTGAGGATGAGGATGAGCCGAAAGAGTGGATGGCACAGGTGGAGCCTGGTGTTCACATTACTTTTGTGTCCCTACCCAATGGAGGCAATGATTTAAAACGAATTCGTTTCGATCGAGAAATGTTTAACAAATGGCAAGCTCAGCGATGGTGGGGCGAAAACTATGACAGAATAACGGAGCTCTATAATGTCCAGAGATTCAACCAACAAGCTCTTCATACGCCACCAAGAACTGAGGATGAGAGGGATTCTTCTTACTCAAAGATGGAAAGGGATAGCCCAATGACTGCAGCGAACAAAGATTGGGCACTGAAAAACCACAAACCTTCAGGAAGTAAAGGTTATTTTCCATCTGACCAGCATTTTGATCATGGAAGCAGCCACCACTATGCAGGGTCAAGTGCCTATCCAACCGGGGGCGCCAAAGGCGACATGTCATCTATGGAAGCCTCACGCACAACTACCTCTTCTAGAGACGAACCTTCAATTTCCGTTAGCAATGCAAGCGACATCGAGGCCGAATGGGTCGAGGAAGACGAACCAGGAGTCTACATAACAATCAGACAGCTTGTTGATGGCTCTAGAGAGCTTCGTCGTGTCAGATTCAGCCGTGAAAGGTTCGGGGAGGTGAACGCAAAGCAATGGTGGGAACAGAACAGGGAGAGAATCCAAGCTCAATACCTATAA 1089 49.04 MFTCIACTKQTDDGGEDGAARGSGTPSTKEAVKSLTTQIKDMALKFSGAYRQCKPCTGSSSYKKGQRPYPDFDTASEGVPYPYIGGASASSTPAWDFPPVNRHPHTRSDSRFKGVFRGDQTPGADSTISACDVVLEDEDEPKEWMAQVEPGVHITFVSLPNGGNDLKRIRFDREMFNKWQAQRWWGENYDRITELYNVQRFNQQALHTPPRTEDERDSSYSKMERDSPMTAANKDWALKNHKPSGSKGYFPSDQHFDHGSSHHYAGSSAYPTGGAKGDMSSMEASRTTTSSRDEPSISVSNASDIEAEWVEEDEPGVYITIRQLVDGSRELRRVRFSRERFGEVNAKQWWEQNRERIQAQYL 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3033872 3039781 - Carg16292-RA Car06g00540 150276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00540 362 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 362 IPR044532 -
Car06g00540 362 MobiDBLite consensus disorder prediction 203 298 - -
Car06g00540 362 MobiDBLite consensus disorder prediction 281 298 - -
Car06g00540 362 MobiDBLite consensus disorder prediction 96 124 - -
Car06g00540 362 MobiDBLite consensus disorder prediction 11 30 - -
Car06g00540 362 ProSiteProfiles BRX domain profile. 307 362 IPR013591 -
Car06g00540 362 Pfam Transcription factor BRX N-terminal domain 23 56 IPR027988 -
Car06g00540 362 PANTHER BREVIS RADIX-LIKE PROTEIN-RELATED 1 362 - -
Car06g00540 362 Pfam Transcription factor regulating root and shoot growth via Pin3 306 361 IPR013591 -
Car06g00540 362 Pfam Transcription factor regulating root and shoot growth via Pin3 142 196 IPR013591 -
Car06g00540 362 MobiDBLite consensus disorder prediction 209 223 - -
Car06g00540 362 ProSiteProfiles BRX domain profile. 142 197 IPR013591 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g00540 Car16g01139 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00540 Car-Chr6:3033872 Car08g00670 Car-Chr8:4304500 9.86E-113 dispersed
Car16g01139 Car-Chr16:9732501 Car06g00540 Car-Chr6:3033872 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00540 - - mcha:111014865 704.131