Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00551 ATGTCGTCCGAAAACGAAAGAATGGAGGAAGAAAACTGGAGGAAATTGGTGAAGGAGATGCTCCCTCCTGGAGTATCTATCCCGGAAAGTGCTGGCGATTTGGATTACTCCATAGCTATGGAGTATGAGGGTCCACCAGTAATCTATGACGTCCCGAGAGTCGAACCTGTTGATGTGAATCCTCATTCGATTCCAATGGCTGAACCTTTATCTGAATCCCAAAGGTCCATTGCTTGTAATGGTCCTCCGATGATTGAACCGATTCCTTTGCCAGTTTCTCGTATTGTTGGTGTCATGAGTTCCCCTACTCAGAGTCCAAGGGTATCAGGAAGTTCGGAGTCTGTAGTATCCGTCCTGCAAAATCGTGATTTCTCTTCAGCTTCACCTTCTGCCTCCCCAGCTTCGGTTCATAACGTTCCTAGCAATCAACCGAGACAAGTGGTTATCGATGCGAGGAGAGCACCTGTTGTCACTTTTAATACTGTCGATCACTCCCATCGAAAGGAACTTAATGTTGAGAAGCAAGTGTATCCAGAGTACATCGGAGTTTCGAAAGAGAAGAAGAAAAAGAAAACTCGAGTATGTTATAGGTGTGGGAAAGGAAAGTGGGAAACGAAGGAGTCGTGTTTAGTTTGTGATGCTAAGTATTGCGGTAGCTGTGTCCTTAGAGCCATGGGATCGATGCCTGAAGGGCGTAAATGCGTCACTTGCATCGCTGCTCCTATAGACGAGTCTAAGAGGTCAAAATTGGGCAAGCATTCGAGGGTCTTGTCTCGTTTACTTAGTCCTTTAGAAGTCAAGCAGATTATGAAAGCTGAGAAAGAATGTCCTGCTAATCAGCTTCGTCCCGAACAGCTGATTGTGAATGGATTACCTCTACGGGCCGAAGAGATGGCCGAATTACTCGGATGCCCTCTTCCTCCACAGAAATTGAAACCTGGTAGATACTGGTACGACAAAGAATCCGGTCTCTGGGGAAAGGAAGGAGAAAAACCAGATAGAATCATTTGTTCGAACTTGAGCTTCACCGGCAAGCTTAGCCCCAGTGCAAGCAACGGAAACACCGAAGTTTACATCAACGGTCGAGAAATCACTAGACTCGAACTAAGGGTGCTTAAGTTGGCAAATGTACAATGCCCACGAGACACACATTTTTGGGTCTACGATGACGGTCGGTACGAGGAAGAAGGTCAGAACAATATCAGAGGAAATATTTGGGAGAAGGCTTCGACACGCTTTGTCTGTGCGTTGTTCTCATTGCCCGTGCCACACGGTCAACCACCACCTGGAGTGAGAGAAGAGGCTAGCAATTATACATCAGTTCCCAACTATTTTGAGCAACAAAAAAGGATTCAAAAACTTCTGCTCATCGGGATCGAAGGCTCGGGAACTAGCACCGTCTTTAAGCAGAGTAACATGTATAAGTATCTCAGCATCCTGCTTGACGGTCGAGAACGCTTTGAGGAGGAGTTCATAAACCGAAAAAAGGCTCCAAATTCTCAGGGCGATCAAGCTCTCGACACTGATGGAGAGAGGGAGGTTAGCAAATGCATATACTCCATCAACTCGAGGTTAAAACATTTTTCCGATTGGCTTCTCGATATCATCGCTACCGGAGATTTGGATGCGTTCTTCCCTGCTGCAACTCGCGAGTATGCTCCATTAGTCGAAGAGCTATGGAAAGATCCTGCGATCCAAGAAACTTACAAGAGAAAAAACGAGCTCCACTTCCTTCCCGATGTTGCCGAGTACTTCTTAAGCAGGGCTGTGGAGGTGTCGAGCAATGAATACGAACCTTCCGATCGAGATATCCTCTACGCAGAAGGGGTGACACAAGGGAACGGATTGGCTTTCATGGAATTTTCACTCGACGATCGGAGTCCAATGTCCGAGACCTACATTGATAATCTCGAAGCTCCACCCCCGCCCCTTACTCGATACCAACTTATAAGGGTAAGTGCTAAGGGGATGAATGAAGGGTGCAAGTGGGTAGAGATGTTCGAAGACGTTCGAGTCGTTGTCTTCTGCGTTGCTCTCAGTGATTTTGATCAGATGTCTCTTGCTGCCGAAGGTAGTGGCAGCGGGAACCTATTACAAAACAAGATGATGCAAAGTAAGGAGCTTTTTGAGACGATGGTCCGACACCCTTGCTTCAAAGATACCCCATTTGTTTTGATACTCAACAAGTACGATCTCTTCGAAGAGAAAGTAAACCGGGTGTCATTGAATGTTTGTGAATGGTTTAACGATTTTAGCCCCGTTCAACCGCTGCACAGCAACCAGTCACTCTCTCATCAAGCTTACTACTACGTAGCCATGAAATTCAAAGACCTTTATCAATCCATCACTGGTCGTAAGCTTTTTGTATGGCAAGCTCGAGCAAGGGACCGAGTGACTATCGACGAAGCATTCAAGTATATAAGAGAAGTTGTTAAGTGGGACGACGAGAAAGAAGAGAACTACTTTGGACCTGAGGATTCCTTCTATAGCACA 2493 46.17 MSSENERMEEENWRKLVKEMLPPGVSIPESAGDLDYSIAMEYEGPPVIYDVPRVEPVDVNPHSIPMAEPLSESQRSIACNGPPMIEPIPLPVSRIVGVMSSPTQSPRVSGSSESVVSVLQNRDFSSASPSASPASVHNVPSNQPRQVVIDARRAPVVTFNTVDHSHRKELNVEKQVYPEYIGVSKEKKKKKTRVCYRCGKGKWETKESCLVCDAKYCGSCVLRAMGSMPEGRKCVTCIAAPIDESKRSKLGKHSRVLSRLLSPLEVKQIMKAEKECPANQLRPEQLIVNGLPLRAEEMAELLGCPLPPQKLKPGRYWYDKESGLWGKEGEKPDRIICSNLSFTGKLSPSASNGNTEVYINGREITRLELRVLKLANVQCPRDTHFWVYDDGRYEEEGQNNIRGNIWEKASTRFVCALFSLPVPHGQPPPGVREEASNYTSVPNYFEQQKRIQKLLLIGIEGSGTSTVFKQSNMYKYLSILLDGRERFEEEFINRKKAPNSQGDQALDTDGEREVSKCIYSINSRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVEELWKDPAIQETYKRKNELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFMEFSLDDRSPMSETYIDNLEAPPPPLTRYQLIRVSAKGMNEGCKWVEMFEDVRVVVFCVALSDFDQMSLAAEGSGSGNLLQNKMMQSKELFETMVRHPCFKDTPFVLILNKYDLFEEKVNRVSLNVCEWFNDFSPVQPLHSNQSLSHQAYYYVAMKFKDLYQSITGRKLFVWQARARDRVTIDEAFKYIREVVKWDDEKEENYFGPEDSFYST 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3129811 3134345 - Carg23412-RA Car06g00551 150287

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00551 831 MobiDBLite consensus disorder prediction 124 143 - -
Car06g00551 831 Pfam G-protein alpha subunit 448 811 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Car06g00551 831 ProSiteProfiles G-alpha domain profile. 450 822 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00551 - - - csv:101207353 1532.69
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g00551 Car16g01126 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00681 Car-Chr1:4060906 Car06g00551 Car-Chr6:3129811 0 dispersed
Car06g00551 Car-Chr6:3129811 Car20g00758 Car-Chr20:4444692 0 dispersed
Car16g01126 Car-Chr16:9660387 Car06g00551 Car-Chr6:3129811 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g752 . . Bda06g01242 . . Bpe07g00239 . . Cmo06g00625 Cmo16g01243 . . . . . Cpe14g00990 . . . . . . . . Cla10g00122 Cam10g0120 Cec10g0129 Cco10g0129 Clacu10g0126 Cmu10g0973 Cre10g0383 Cone8ag0500 Cone12ag0501 . . Lsi07g01155 . . Cme06g02435 . . . . . . . Bma12g00240 . . . Cma06g00618 Cma16g01196 Car06g00551 Car16g01126 . . . . . . . . . . . . . . . . . Csa03g00126 Chy06g02179 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002284 3 3 2 2 2 1 3 1 1 2 1 1 3 2 2 3 1 3 3 1 2 2 2 2 2 2 2 4 2 2 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00551 Car_Chr06 FPKM 0.221213 0.0 0.173353 0.249225 0.233005 0.0 0.238276 0.0 0.0 0.0